RNA id: TCONS_00007298


Basic Information

Item Value
RNA id TCONS_00007298
length 5590
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_003790
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 410870 ~ 426525 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACTCTGTAGTTCtgtctcactttctctctctctccctccctccacTTGCTCTCCTATCTGTGTCCATCTCCCTTAGTCTTTTTCTCTGGATCTCCATTTTGCAGCTTGATCTTCTCTCAGGTTTGGGTTCCTTCAGTGCTAGCACGCCgaactttgtttttaaatgattttctcTGTCACTCCTCTCTTCCTCTTTCACTCTCTCATCTACTTTTTGACATTGTCGCCGTCATCCAGTCACATTTGCATGAATGACGTTTGTATTTCCTCCATCAGCAGCAGAAGCGGCTGTAAGAAAACTAAAGAGGGAAGAGGAACCGAGGGCCTTTGTGGTGAGAGAGAGAGTGCCACGGTCACATGTTCTCTTGGCATTTCACATCAAGGTGGATTTTGGACTTGTTTGGAGGTAATTGGGTGACTTTTAGCCACGGCAGTGTGACCTTTGAGATCCAGTCTCTGGTAATTAGCGAGCTCCGTCTCCCAGCATCACAAgggttgtgttaccatggcaactagaAAGCAGAGCTTTGTGCGAGCTACCGAGCCTCAGTGTTCAGAGTCTGCACAGAGAGAGGAAGAGGCGCATGTTCAGGCCCGTCTCACCACTATGTATGTCCAGAACGTTCCTGCTTCTGGCCTGCAGCCATACCCTCAGGCCCAACCTGGAGCCTTGCAGGACGCAACGGTTGTACCACTGTTCCTGCCCCGGATGTGTAGCAACTCGACTTTGCCCTCATTGACATTGCATATTGCCAGCACGGCTGCTTTGCAGCAACAAAGACTAGTGGCTCCAGCGTCCGCGGGCAGACCTAAGTCTCTTGGGAAGCATGTTTGCCCACATTGCGGGAAGGACTGCCTGAAGCCCAGCGTGCTGGAGAAACATCTTCGCTGCCACACAGGAGAGCGACCGTATCCCTGCACGACCTGTGGCATTTCTTTCAAGACACAGAGCAAtctttacaaacacaagcgcaccCAGGCTCATGCCCGTCATTCCAGCGAGTCTGAAAAAGGCACCTTCAGCAGTCAGGAGAGCATGGAGAGCTCGAAGGACAACTGTTTAAGTCCATCCTTAGAGACGAACTGTGTGGATCAAGCCGGTGCGAGGAAAGCCAAAGAAGTTTTTCCTACAGATTCAATAACTACACCAAGTCAGACAGACCCTGCAGAGACTAGGATGATGTCTGGCATAGAATGGGCATTACAGAATGCTGCCATGGTCGGAATCAGCACAACGCCAGCACTTCAAGACAAGGTAAAGTCATTGAGAAAAACTGCGGAGTTTTCCGTTGATGCTATCAAACTAACGAATGCAAATGCTATCCAGCAGACAAGCGCACTGACTGTGGATGGATGCACACCGCTATCTTTAAACCGCATGCCTCTACAGAGGCAGGAGGCTTTATTTTCCAAACCATCCTTTCCATTCCTATCTAGCCATTGCAAAGCACAAAGCCATGACAGTACAGACTCTGGTTTCAGCGACAGCAGCGAGCATCATTCAACCAGCAGTCCTGGAGCAAGCCTGCACGATCCCAGTACAGAATCGCTGACAGAAACCCCAATGGCACAGCAAGAACCAGCTGCCTCCCAAATCCCCCCAGAGATGACCTCCGAAGACCCAAAAAGCAAGGTGTCCGTTCAGGAGAAGCAGAAGCTGGAGGAGCGCATTTCAAAACTTATATATGAGAATAGTGTGTTGGTGGACAATAAGCTACTGGAAAACGTGCGACCAAGAAAGACAATATTGTCAAAGCAAGGAAGCATTGATCTTCCGGTGCCCTACACGTATAAAGACTCCTTTCATTTTGAGATAAGGAACTGCAAGCACGTCTTGAGCTCCCAAAATCCAGACCGAGGAGGTCAAGCCGTTCACAGGTCTTTGCCCACACAACTGTCCGCCAGTCTGGAGCACGCACCATTAACACGCAGCAGCTCTCTACCCTTCTCTATGGGAAGCAAACCAGCTGCCGATGGAGCAGTGAGTCTAAATCTCAGCAGACGATGCAGTGCAGGCCATGTTTACCCAATACGGCCATCAAATCAGAGGGCAGCAACACACCGCTCACTAGTCAGACAGGTGGCAGTGGATTGCCTGTATAGTGCCGAGGCAGAAAGAGGCAGCATGAGCAGCCTGAGCTCAGACGGAGACAGCACCGATGTCGCAACGGAGTCATGTGTGAAAGCAACCTACAGGAAGAAAGCACAGAAGTTCGACTACACAAAGTGGCACACCTACAAAGGAGGCACATTTAGGAAACTCTACAATACTCCGAAAGACTGTGCACTAAAGGCGAGGAAGACTGCGTCAAGCACTGAACCGACAGAGAGTCTGGACATCCAGAGACATAATGGATCAATGTTGACCTTGCCAAATGAGCTTAAAGTCTCACATACTGGCTTTGAACATGATAACGTGAAGGGATCAAGCGTGGAAGATATACAATTAACACAACACACCGTCTGCCATGTCCCATCAGAGCGGAAGAAACAGCGCACTGGGAATGATGTTCAAACGCTCAGTGTTTCAGATCCTAAAGATACTGGAAATCTGTGTACGTTAATGAGCCAGTCATTCTTGTCAAGTTGTGCAGAGAGCGGCTCCATCACTGTACACAGTGTCAACATGCAGAATGTCCACTCTCAGAGCAACTTCATACAGACAAGTCAGTTCCTGGAGAATAATTCCCTTAGTGGTGGTGCTTCTTGTTTGGTGAGTATGAGCGGGGCATCTGGCACCCCGTCTGGTTCACTCAGCAGCCCTACTGTGCCTGAAGCCAAGACCAGCTTTCCTCCCATGTACCAGCTGAAGATTCCTTGTCCCGCAGATGGAGTGTCAGCGTCGTGTTCTGGCTCCACTTCAGCACATTGCTCAACCGCAGAAAGTCACCAAACTACAGAGCAGCCTGAACTATCCTCAAAACAGCACGCAGGATTTCACCAGAGTCAACAGGAGGCAATGTGCGTGGCAGCCTCCAAGGGGCTGAATCAAACAGACACTCTATCCAAAGTCATGTCAGAGATTCAGTCCACCACGAACACATCAGCTTCACTTGTTTCCGCTATGCCGCCTCCATTGGTGCAGCATCAAGTGTCTTTGTTGCAGAATAACCGAGGTGAGGAGGAGAATCAGTCAACTGCTGCAGTATATCAGCCTGCTAAAACATTGGAGAGCTCTCGCTTCACCACACCAACCATGTCAACAATGAGTTACTGCTCTGGACCAACAGTATATTCTCCGGTAACTACAGTACAGAATCATCCTTCATTCTCTGTTATTGAATCAGGAGAACCCAATGCTTGTACAGACAACATCGCATCCACAGTGTGTGAGAGTCCTCAGAACAGCATGGCATCTAATATCCCCACGAGTGACTCAGAAGAGCTTCAGTCTGAAGGAAAAGTGATGCTGCTGAATGGCTCGGCTCAGGCTCAGAACACGTTCTATGTGCGCACGGCTGACCTCCAGATTGTCATGCAGCTCATTTCTGATGAACAGTTAGCACTGATCGAGCCTCATATTGAAGCCATGTCTTCAGCGCAGACGACACTGTTGCAGGAGGCGTACAGCAAAGATGTGCCGCAGGAACTCATCAATATTGGTGAGACGCAAATAAATAGCACTTTCAGGTGTTCAGCAAACAAAGCAGACACCTCTCAAAATGATGTTACCACCATGCCTCAGTGTGTCTCATCTTGGTCGCATCCACAGACAAAGTTTCACATCTCGGCCTCAGCGGACTATcgtaaaaacacaacacaaccgCTGGAGTTACCAGAgctgatgaactctggaagtcttGAGGTTGAGTCAAGTCACAAACTAGTGGATGGAGACACTCTGACTGAGCCTAAATCAGTGGAGAGCAGTTGTTCTATAAGAAAATACGACAAGGAACCACAAAACTGTGTTCACAACAAAAACACAGTAAGCACTACTGAGGATCAAACATTCACAGAGGCAACCAGAGATCAACAAGTGGAATCAAATCACATTCCAACTATAAACACGAGTGAGCTAAAGGAAACAGGTCACTTCATGTCAGAGAGCGTTCACACAAACACAACTACACACCTCGCAACTTGTGTTTGTGAGAAAAAGACGACAAAAGAGATGCCAGAACAGCCCAGAGACAGCAAGACTAGCTTAGACACGAGAGAAATAAAGGCTTGTGACACAGATAAGGTGACTGAAACGTTGTGTCCTGAACAAACAGCTGCTCAGCAGGATTCCCAGCACGACTTTGCTCCCGGTGATTTTGGAAATCACACTTATAGTGATGTGAAATCATCCTGCCCGACGCCAGACAGGACATCTAGCCGTAACACTGTTAATGGAGACAGAAGTAAGCGAGATGTCCACACACAGCACGCCCATCTGGAGGTGTCTACAGAATCTGGGGAAGATGGTGTTAGGAAAAACCTGAGGTTTCAGAGGGACTCAAGGACAGATAGAAGGGAATCAGGAGCCAAAATACGGGAAGATGGAGATGAAGAGGGGAAAAGATCAACCATGGAGATGACTGATGGAAACAACACATGCCGAAGCTCTGGAGACacttacaaacaagacaaaagaaAGGATCAGGCGATATCCCGTGGGAAACATCAGACATCTACTCGAGCGAATCCTCAGTTCTCCCAGGAAGTGTCCTTTAACTTTTCACAATCACTTCATCATGAAAAACTCAATCCAGAAACATCTTTCTGCACAGACATAACTCCACCAAACTGTCGAAGTAAATGTGAAAACAGCAGCAGGACAGACGACATGGGTGAATATTTGGGGAACAGCCCTTCCCCAGAGACTGACCAACGGGACATGTCCTCATTAAACACGGCAAAACGTTCCAATCAAACATGCAGACGTTCAGCATTAGCGAACACCACGCAGAGTGAATTTCAAAAGGAGACGCAGGCAAGAGGAGCCATGAGCTACTGGATTTACTCAAAGCGCACTCAAGTTCACAAAACCAGCAGCACATCTGCATCAGTTCTCCAAAACAACTGCGCTGTTTCAAACACTGAGACGGACAATGCGAGCGTTACTCCACCATCCAGTGATGGATCCAGGTCTCAAATGACAGTTCAAGAAGCACAGACGCATCAAATGTGTGCTCCAGTCACACACAGCAGCTCAACAGAGTCGAAGCAGCTTTATTTGGGCAGCAGCAGCAGTTATCTGGAACTGGAGGACGGTAACAGCAGCAGCGATGATGAGCAGAAACTCGTCATTGAGCTTGAGTAAGGTGAGAGAGAACAGGCTGACCTGCTGAAATAACACACTCCAATACTGTGAGTGCTGTTCCAGAGCTGCATTCATCTCTGTACTGATGGAGAATGAGAACAGCACAAAACTACAGTCATGTGAAAAAGTTAGCACACCCAACAACCCATGTCTGATTTTCCATATCAGGACATAAAAATGATCAGATTTTTGGCAGGTCTtaaaatttgggaaataaaacCTGAGACCAACAGCATTATactgtgtacagttgaagtcaaggtAAAATCCtgtataaatatttccaaatatttctcaagtgatgcaaacagaccaaagacattttcacagtatatccagc

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081022-210 Predicted to enable metal ion binding activity. Is expressed in female organism. Orthologous to human ZNF831 (zinc finger protein 831).

Ensembl:

ensembl_id ENSDART00000157054

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008725 lncRNA downstream 41184 369127 ~ 369686 (-) True XLOC_003788
TCONS_00008439 lncRNA downstream 216155 193460 ~ 194715 (-) True XLOC_003781
TCONS_00007286 lncRNA downstream 220409 183570 ~ 190461 (-) False XLOC_003780
TCONS_00008724 lncRNA downstream 223030 185174 ~ 187840 (-) True XLOC_003780
TCONS_00008438 lncRNA downstream 227545 178319 ~ 183325 (-) True XLOC_003779
TCONS_00007306 lncRNA upstream 56730 483255 ~ 486328 (-) True XLOC_003794
TCONS_00007311 lncRNA upstream 118936 545461 ~ 548398 (-) True XLOC_003797
TCONS_00007314 lncRNA upstream 139698 566223 ~ 570421 (-) True XLOC_003796
TCONS_00007316 lncRNA upstream 172915 599440 ~ 601303 (-) False XLOC_003799
TCONS_00007317 lncRNA upstream 173233 599758 ~ 601308 (-) True XLOC_003799
TCONS_00007297 mRNA downstream 14146 394493 ~ 396724 (-) True XLOC_003789
TCONS_00007295 mRNA downstream 101450 307332 ~ 309420 (-) True XLOC_003786
TCONS_00007294 mRNA downstream 102032 306007 ~ 308838 (-) False XLOC_003786
TCONS_00007293 mRNA downstream 104337 306007 ~ 306533 (-) False XLOC_003786
TCONS_00007292 mRNA downstream 123200 281833 ~ 287670 (-) True XLOC_003785
TCONS_00007300 mRNA upstream 3251 429776 ~ 438294 (-) False XLOC_003791
TCONS_00007301 mRNA upstream 4493 431018 ~ 438518 (-) False XLOC_003791
TCONS_00007302 mRNA upstream 4563 431088 ~ 438492 (-) True XLOC_003791
TCONS_00007303 mRNA upstream 30898 457423 ~ 472547 (-) True XLOC_003792
TCONS_00007305 mRNA upstream 47908 474433 ~ 486532 (-) False XLOC_003794
TCONS_00007296 other downstream 59169 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007304 other upstream 33290 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007326 other upstream 497270 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 642881 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3527198 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 5645435 6071960 ~ 6072066 (-) True XLOC_003881

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_05989326_06003691.mRNA True 6331 mRNA 0.42 3 CI01000057 5988769 ~ 6004299 (-)