RNA id: CI01000057_05989326_06003691.mRNA


Basic Information

Item Value
RNA id CI01000057_05989326_06003691.mRNA
length 6331
RNA type mRNA
GC content 0.42
exon number 3
gene id CI01000057_05989326_06003691
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5988769 ~ 6004299 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTTGTTTAAAAATGTGTCTTCACATTTTCATAAACGTGAAAATCTAGTCTAGGTAGGAGGTCCTTGATGTTATCGTTTTTCTAGAAATGAGTCATAACTTTACCACTGCTGTTTTTTGCTCATACTCCTCTGGTGCTTCTGCAATATGCAAATATTGACCATGTGTTCGCATTAAATATGAGATTCCTACTAGACTTAAAATCATAGCCATCTTAAATTATCTTCACATTTTTACATTTACATGATTAACTGATCAGAGAAAAAGACTATAGCTGTCAAATGTAAACATTCTATTGAATTGAGCAAATTCAACAAATTGTTTCTGCTGGCATACCATTTTCTTTTGAAGCCCAGAATAGCCAGCCTGCTCTGATACACATTTTGTAGCTTCTACCCACTCAGTACCCTTAAATGATGGTGATTTGTAATAAGGTGTGAAATCTTGGTTTCTTTAGCTTCCTATCACCTGAATTCTAATTTGAATAGGGGGAGGAATCCTTTGATCCAAAGTCCAGGCCTAATGAAAAAAATAATAATAATAACACTGTTTCTTTTTTTAGGTAATTAGTGAGCTCCATCTCCCAGCATCACAAGGGTTGTGTTACCATGGCAACTAGTAAGCAGAGCTTTGTGAGAGCTACCGAGCCTCAGTGTTCAGTGTCTGCACAGAGAGAGGAGGAGACGCATGTTAAGGCCCCTCTCACGACTATGTATGTCCACAACGTTCCTGCCCCTGGCCTGCAGCCATATCCTCAGGCCCAACCTGGAACCTTGCAGGATGCAACAGTTCTACCACTGTTCTTGCCAAGGATGTGTAGCAACTCGACTCTGCCCTCTCTGACACTGCATATTGCCAGCAGGGCTGCTTTGCAACAACAAAGGCTAATGGCTCCAGCAACCTCGGCCAGACCTAAGCCTATTGGGAAGCATATTTGCCCACACTGCGGCAAGGACTGTCTGAAGCCCAGCGTGCTTGAGAAACATCTCCGTTGCCACACAGGAGAGCGACCGTATCCCTGCACTACCTGTGGCATTTCCTTCAAGACGCAGAGTAACCTTTATAAACACAAGCGCACACAGGCTCATGCCCGCCTTTCCAGTGAATCTGACAAAGGCACCTTCAGCAGCCAGGAGAGCATGGAGAGTTCAAAGGACAACTGTACCAGTCTACCCTCTGAGAAGAATGACGGAGATTCAGTTGATATAAAGAGAAGCAAAGAGGTTCTTCCTGTAGTGTCAGTGACAATACCAGGTCAGGAAGACACCACAGATGCTAAGAGAGTGTCTGACATACAATTGGCATTACACAATGCTGCCATGGTTGGATTTAGCACAACTTCAGCACTTCAAGACAAGGTAAATTGTTTGAGAAAATCTGTGGAGTTATCAGTTGGCATGAAAAATAATCCTGCTATCCAACAGACAGGTGCACTGAGTGAGGATGGATGTACATCGTCGATTCCAAATCGTACACCGCTTCAGAGGCAGGAAGCTTTATTTTCCAAACCATGGGATTCCCCCATGTCCCGGGGAAAGTCTCAAAGCCATGACAGTACAGACTCAGGCTTCAGTGACAGCAGTGAGCATCACTCATCCAGCAGTCCTGGAGCAAGTTTGCATGATCCCACTATGGAAACATTTAAAGAAACCACTATGGAACGGCAAGAACCAGGTTCCTCCCAGACACCCTCAGAGATGACCCCTGAGGACACCAAAAGCAAGGTGTCCATTCAGGAGAAGCAGAAGCTGGAAGAACATATTTCAAAGCTTATATATGAGAATAGTGTGTTAGTGGACAATAAACAACTGGAAAATGTGCGTCCAAGAAAGACAGTACTGTCAAAACAAGGAAGCATTGATCTTCCTGTGCCGTACACTTATAAAGACTCCTTCCATTTTGAGATAAGGAGCAGCAAGCACATCTCAAGCTCTCAAAATCAAGACAAACGAGGTGGGGTAATTCACAGCTCTGTGCCTACACAACACTCCACTAGCATAGAGCATGCACCATTAACGCGAAGCAGTTCTTTACCTTTCACTATGGGTGGCAAACCCACTGATGGAGCAATGAATTTAAATCTTAGCAGAAGGTGCAGTGCAGGGCATGTTTACCCAATAAGATCATCAGACCAACAAGCACAAATTCATCGCTCACTAGTTAGGCAGGTAGCGGTAGATTGTTTGCCTACTGCAGAAGGATCCCCAGTTGAAAGAGGTAGTATGAGCAGCCTTAGCTCAGATGGAGACAGCACCGATTTTGGAACAGAGCCATGTATAAAAGGAAACTACAGGAGGAAAGCCCGGAAATTTGACTACACAAAATGGCACACTTACAAAGGTGGGACATTTAGGAAACTATACAATACTGAGAAAGACTGTCCACTGAAGATGAACAAGACTGCATCAAGCTCTGAACAAGCAGAGAGCCTGGAAACTCAAATTAGCCAACAGAGAGACGATGGATCTGTGTCTCTGAGCTTTACTTCCTGTTCTACTGTGACCTTACAAAATGACCTTAAAGTGTCATATACCAGCTTTGAAAATAATAACGTGATGGGGGCAGACATGGAAAGGGATAAATCAGCAACACAACACATTGACTGCCATATCCCATCAGAGAGGAAGAAACAGCGCACTGGAAATGATGTGCAAATGCAAATTTCAGATTCTAGAACTGGACAGGCAAATGGAAATCTGTGTGATTTAATGAGTCAATCACTTCTGTCAACTTGTGCAACACAGAGCTCCATCACAGTTCCAGCACAAAAGGTCAGCATGCAAAATCTTCACCCGCACGGTAGCTTCATACATCAGTTCTCAAATCCAAGTCACTTCCTTGGTAATACACTTAGTCCTGCTTTTTGTTTAATCAGTGTGACTGGGACATCTGGCACCCCGTCTGGTTCTATCAGCAGCCCTACTGTCCCTGAAGCCAAGACCAGCTTTCCTCCCAAGTACCAGCTGAAGATTCCGTGTTCCACAGATGGAGTGTCAGCTTCTTGTTCTGGTTCCACTTTAGCACATAGCACTTGTTCAACCATTCCAGCTCTTAGGGAAAGCTGCCAAACTACAGTGCAGTGCCATCTTGAGAACAGTGTATTATCCTCAAACCAGAGTCAGGGTGCTTCAATAGTCGCAACCTTTGACCAGAGTAAGCAAGATGTGTTGTGTGCGACAACTTCAACACCTATGTCATCGGTTTCCTGTTCAGGGCTGAATCAAACAAACTGTTTATCCAAAGCCCTGACACAACTTCAGTCTACCACTCCTACATCAATTTCACTCATTTCTCCTATGCTACTTCCACCAGTGCAGCATCAAGTGTCTTTGTTGCAGAGCAACGGTGCAACAGGTGCGGTGGAAAGCCAGTCACTAGTTCCTGTATCATCTGTATTGCATCAACCTCTTAAAGTTTTAACAAACTCAGAGAACACTCAGCCTGTCACATCAACGAACACAATGTCAACAGTGAGTTATTGTTCTGAATCTGGTCTACAAATCTATGCTTCAGTAACTACGACACCTACAGTTCAAAACCATCCTGCCTCCCCTGTGAGTGGACCAGGAAAACCTCTTGGTCTTACAGCGGACATCAAATCCACAGTGTATGAGAATACTCTAAACAGCACTGCCTCTAAAATTACCACAGGTGACTTTCAAGGGTCCCAGTCAGAAGGAAAAGTGATAGTACTAAATGGCTCAGCGCAGTCTCAGAATACGTTTTATGTACGAACAGCTGACCTCCAGATCGTCATGCAGCTCATTTCTGATGAACAGTTAGCACTGATAGAGCCTCATATTGAAACAACAACTTCAATCACTTTAACAAACCATACATCGCTTTCACAGGAGGTATATAGCAATGGTGTGACTAATGAGTGTACAGCACAGGAAATGGTAAATAATGGTGAGATGAGAAAAAAGAACACTTCCAATCATTGTGAATCTGCCAGTTCCATAAACAAAGCAGAAACTGTTTACAGTTTAAACTCTCAAATTGCTAAAAATTATGCAAATGGAAGCCCTCAGTGTGTTTCATCTTTGTCACATCCACAGACAAAGTTTCATATTACAGCTTCAGTGGATTACAATAAAAATTCAACTGGAGAATTGTATGAACCACAGAAGATACCTGAGAATTCCCAGGAGAGAAAATCTGCTGAGTTTGAGGTTACCCCAGGGTCACACCACAAACTAGTGGCTGGAGTTGAACCTCATTTAGTGGACAAGAACTATTCTAGACGAGAAAATGACAAAGAGCCCAAAAACTGTTCTGTCCATAACCCAGATTTGGTCAGCTCCCCTGAGGAACAAAAATTCACAGAGATAACCAGTCTAATGGAGCCAAATCACATTCAAACTATGCCAGTGGAGCCAGATGAAACAGACCTCATGTCAGTCACATTATCAGAAAATGGTGAGAGGGTTGAAACAATGACAACTACACAGCTCGGAACTTGTATTTGTAAGAAAAAGACCTCTAACGCAGAATCACAGCAGATGCAAAAAGTGATAAACTCCACAATACAACCCAGTCAGAACAAGCCATACAGGGCTGTATGTGGAAGCTCAAATTTAAATACAAGAGAAATGAGAGCATGTGACACAGGTAAACTCAGCTGCAAGCTTGGGACCCTGGCAACTGAAATGTGTGGTCCAGGACAAACACCTACACAGTATGAATCCCATCAGGCCTTTGCTCTTGGTCCAGTTGACTTTGTGAATGACACTTATAATCAAATAAAAGCATCATGCCCAATGGTGAACAGGACATCTAACATTCGTGACATTCTCGAGGACAGCACCAAATGTGGAGATGTGCATACACGCCATGCCAATCTGGAAATATTTACAGAGCCTGGGGGGAATGGTGCCCTCAATAGCTTGAGGTTTCACAGGGACCCTGGGACAAAGAGCAAGGAATCAATCCCCAAAGAACCTGAGAGTGGAGCTGGAGAAGGGGAGAGACCAAGCACAGAGGTGGCTGGCACGAACAACACACACAACCTCACATGCCAAGGCTGTGAAGACAATGGAAAACAAGACAAAAGAAAGGAAGAGGCAATGTCTTATGAAGAACATCAGACATCCGCTCAAGCTCACCAGGAGGTGTCCTTCAACATTTCAGAACCACTTCAGCATGAACAATTCAGAGATTCAAACAATCCAGATGCATCTGTTTGCACAAACATCCTTTCACAAACATGTCAACATGAAGGTCAAGGGGAATGTAACACCAACACCAGAAAAGACAGCATGGGTGAATATTTGGGGAACAGCTCTTCTCGAGAGACAATCCAACATGAGACATCCTCACTGACTGTGGCAAAAAATTCTAATCACACATCAGGACATCTTTTGGTACATCCACTCTCAGTGAATACCATGCAAAATGAATTCCAAAAGGAGATGCAGACAAGGGGTTCAATGAGCTATTGGATTTACTCAAAAAGCACCCAAGTTCAGATGCACTCGTCACAACACAAAACAAGTGGCACAACTGTATTAGCCAGCATTTCGCAAAATAACTGTGGTGCTTCAAAGATTGAAACCGCCAACACAAGTATTACTTCATCATCCAGTGCTGGGCCCAGTTCTTGCAATGCCTCAAATCAAATATCTAGTCAAGAACTGCAAATATGTCCCCCAGCCATACATAGCAACTCAACAGAGCCTAAACTGTTCTATTTAGGCAATAATAGTTACATGGAACATGAGGACAGTAACAGCAGCAGTGATGATGAGCAAAAACTAGTCATTGAACTTGAGTAAGGTGTAAGTACACACAGACAAGGCAAATCAACGCATTCTCACTTCCAAGGTGTCCAGTACTGCCACTTGTCCAAGAGCTCCATGCATAACTATACAGATGGCAAAAGAATCCTTTAGCAGCTTGCAATGCATGGTAATTTTGTCATGAAACTATCATTTTGTCATCACAACATATGTCAGATAAAAATTCAGTCACTATATCAATAATTTATTATATATAAATCAATAATTTATTCAGAAAATGGCAAATATTCTTATGCGTTTATTTTGTCTTCCTGTAGTCCAAACTGTAGGCCATGGATTTGATTCCCAAGGAAAGTGAGAACTGATCAAATGCATACATTGAATGCAGTGTAAATCACTTTGGATAAAAGCCAAATGCATAAATCATTTTTATGTTTTATATTGTGGAAAACTGGTTAGGTTTAGGGTAGATGTGTGGTTAGATGCTCAAAATGTCTATAATATAAATACTTTTCTAGATACAGGAACAACTGACTAAATGTGCAGAATTAAATGCATAATCAGTATATAATACATCTTTTTGTAGAAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280450 lncRNA downstream 13186 5975292 ~ 5975583 (-) True G247098
TU280445 lncRNA downstream 19551 5968851 ~ 5969218 (-) True G247093
TU280444 lncRNA downstream 19971 5968588 ~ 5968798 (-) True G247092
TU280431 lncRNA downstream 20535 5967836 ~ 5968234 (-) True G247079
TU280443 lncRNA downstream 20986 5967477 ~ 5967783 (-) True G247091
CI01000057_05955545_05960873.mRNA mRNA downstream 27671 5955538 ~ 5961098 (-) True CI01000057_05955545_05960873
CI01000057_05925181_05926068.mRNA mRNA downstream 61474 5925071 ~ 5927295 (-) False CI01000057_05925181_05926068
CI01000057_05857113_05861024.mRNA mRNA downstream 126290 5856980 ~ 5862479 (-) True CI01000057_05857113_05861024
CI01000057_05849700_05856513.mRNA mRNA downstream 132256 5849106 ~ 5856513 (-) True CI01000057_05849700_05856513
CI01000057_05842522_05847302.mRNA mRNA downstream 141467 5842319 ~ 5847302 (-) True CI01000057_05842522_05847302
TU280026 other downstream 62974 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068
TU280085 other downstream 705152 5211110 ~ 5283617 (-) False G246780
TU279999 other downstream 1057349 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU279998 other downstream 1057626 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279491 other downstream 2091078 3895949 ~ 3897691 (-) True G246256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007298 False 5590 mRNA 0.48 4 NC_007122.7 410870 ~ 426525 (-)