RNA id: CI01000057_05925181_05926068.mRNA



Basic Information


Item Value
RNA id CI01000057_05925181_05926068.mRNA
length 2225
RNA type mRNA
GC content 0.44
exon number 1
gene id CI01000057_05925181_05926068
representative False

Chromosome Information


Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 5923540 ~ 5927295 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCTGTGAGGATGCTGAAGCGCGCATTGCTGTGTGGGAAATGTAGTTAACAGTGTCACAGGCTCAAAGTCGCTGTACTACACGATACTGTATGTGCACTGTAAGCGAGCGACGCGACAAAAATACAACCCGACGCGCGCTATTTAAGACAACTTCATTGATTGTGCTAATTATGAGAGCGTTCTCGTTCATTTAGAATTGCTCTCGCGAATGTAAATTGAGATCTCTCTGAAATGTTAGCGCTATGCATTGTTTATAGACATGCAGGACGTGAGAATGTCTTATATCATGTACGGTGGTCTAATAATAATCGCTGCTGTGGTTTCGCCTACACCTCCCTATGGGATCAGTAGTTAAATGTCATAGGCTCTTGATCTCTGCGTATATTATTACAGCCACTCTGGGTGAAGTGGTCTTCTCCACTGTAAAATTAATATGTTGTGTGTTTTTTAGTTTTAACTGGACATTACGAGCGCGTTCTTCGTAATTATATTCCTCACAGCCTACAGTGAGGTAAGAATCTGTTGCCAGATCTAGAGGTGTATCGCTTGAAAGAGACCCGTCAACTGTGTGTTCATCAAGTGTTACGCATTTGTTTTTAGGCTTTAGTATTAGGTTAAAGGGATAGTTCACCCAAAAATGAAAATTCTGCTCACCCTCATGTCGTTCCAAACCTGTATGAGTTTCTCTCTTCTGCTGAACACAAAAGAAGATATTTAAAGAATGTTGGTAATCAAACAGTTGATGGACCCCATAGTAGGAAAAAACAATTCTATGGAGGTTTGGAACAACATGAGGGTGAGTAAATGATGACAGAATTTTCTTTTTTGCGTGAACTATCCCTTTCACATAGTCTAATGAAGAAATTAACTAGCGTCTCCAAAGGGGCACTTTATCGCAAAGGGTTTTTTTTTTTTTTTTTTGGTTGGTTTTTTTAATGTCTGAATGTCTTTACATTAATATAGCAAAGTTTTTCACTGAAAATTGACATTATAAAATAGAATTACGTATTTATACACTTTATGGTTGTCTAATATTAGTGGTCCATAGTTTGTAGAAATGCCAAAAAATCTTTTAGTTCTGGCAAAAGTACAGAAAGATGCTACTTGGAAAATACAACAACACTCATATATTTTCAAGCCTACGTGAAACTACATAACTAGTGTATTTACAAACTTTGTTCATCTTCTTACATATTCTCCTTTTGCTCATAGTAAACGCAGTGAGAATGGAATCCCATCCGCATGGCTCTGGACCTGCCTTGCAGTTCACAAGCGGTGTTAGTGAAGTATCAAGACCTGTCCAGACCTTTCATCTTCGGGACATCTACAACCCCAAACCACTTCCACAAAGGACCCCGGTGGCAATTCGGCCACCCAGCCCAAAACCAGGTCCTCCTCAGGAGCCCGTCGTCCGGCGTAGGCCGTCCTGTGAGCCGGAGCCAAAGCCCATCATGAGGAGACGGGCGAAATCTCTCTCCTCCTCCACAGACGAGCATTCCTGCAGGAATGTGCAGGTCCGCTTCGTTGATTCCTTAGGGTTGGAACTGGAAGATGTGAAGTTCTTCAAGGCCAGTGAGGACCCGCTGGTGCCGGTCCACGTCATCACGAGACTGCTGGCAAGTTCTGAGCTGGCCTCCAGGAAGAAGCTGGAGCTCTCCCTACCCTACTTCCAGCCGTCCTTCCCTGACAATTTGGGTGCCGAGGCTGGATTCCTCAAGCGCTTGTGCCAGCAGAGAGTTTGCCTGGAGCAGGTGTTTTGCTCTGAGCTGGGAATTATAGGAACCGTGCAAGTGCTGAACGTAGCCTATGAGAAAGAGGTTATGGTGCGCTACTCGTTCACAGACTGGAAAAGCAGCGCGGAGAGTAAAGCGAGCTGGACCTGCACCATCCACAGACACGGGCCTGATCCAGAGTCAGACATGTTTCGTTTTCACCTGCCTGTCCCACCTTTCATCGTGCAACCAGGTGCCATGCTACAGTTTGCCATCTGCTTCCGGGTCAGAGGATTTGAGTACTGGGACAATAATGGTGGATGTGATTATAAACTGACCTGCCAGACGTACAAACTGACCGTCCCCAGAGAGTGTGAAGACAGCCTGCTGCATTTCATCTGACTCTCCACTCAAGCTGCACTGCGATACAGACCTACACACACACAATTCAAGGTTCATCTGATAGAGCCACACTTTTGCACAAGCATTTTAAAATGGAAGTTATCATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU280420 lncRNA downstream 17748 5907081 ~ 5907323 (-) True G247068
TU280419 lncRNA downstream 18910 5905856 ~ 5906161 (-) True G247067
TU280417 lncRNA downstream 20915 5903936 ~ 5904156 (-) True G247065
TU280416 lncRNA downstream 21361 5903443 ~ 5903710 (-) True G247064
TU280415 lncRNA downstream 22522 5902317 ~ 5902549 (-) True G247063
TU280422 lncRNA upstream 12923 5940218 ~ 5940445 (-) True G247070
TU280427 lncRNA upstream 22529 5949824 ~ 5950029 (-) True G247075
TU280443 lncRNA upstream 40182 5967477 ~ 5967783 (-) True G247091
TU280431 lncRNA upstream 40541 5967836 ~ 5968234 (-) True G247079
TU280444 lncRNA upstream 41293 5968588 ~ 5968798 (-) True G247092
CI01000057_05857113_05861024.mRNA mRNA downstream 62592 5856980 ~ 5862479 (-) True CI01000057_05857113_05861024
CI01000057_05849700_05856513.mRNA mRNA downstream 68558 5849106 ~ 5856513 (-) True CI01000057_05849700_05856513
CI01000057_05842522_05847302.mRNA mRNA downstream 77769 5842319 ~ 5847302 (-) True CI01000057_05842522_05847302
CI01000057_05830634_05838724.mRNA mRNA downstream 86024 5830058 ~ 5839047 (-) True CI01000057_05830634_05838724
CI01000057_05827116_05827514.mRNA mRNA downstream 97557 5827093 ~ 5827514 (-) False CI01000057_05827116_05827514
CI01000057_05955545_05960873.mRNA mRNA upstream 28243 5955538 ~ 5961098 (-) True CI01000057_05955545_05960873
CI01000057_05989326_06003691.mRNA mRNA upstream 61474 5988769 ~ 6004299 (-) True CI01000057_05989326_06003691
TU280085 other downstream 641454 5211110 ~ 5283617 (-) False G246780
TU279999 other downstream 993651 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU279998 other downstream 993928 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279491 other downstream 2027380 3895949 ~ 3897691 (-) True G246256
TU277965 other downstream 4003650 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400

Expression Profile