RNA id: TCONS_00008724


Basic Information

Item Value
RNA id TCONS_00008724
length 2597
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_003780
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 183570 ~ 190461 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgtgaggcaacagcactacctactgcacctctacattgccatatatatatatatatatacacacacacacacattacgtaTATATAATAGTTCAGTTAGACTGCATGCTTCATTTTATTTTCCAGTAGGAATGAATGTTGTCCTGCTCTCCTCATACAGCTGTACACCGGTTACAttaccataatacactgtgatacagCCCGTTTCTTTAGTTTGTTGATCCGCTCTAGAGTTCGTTTCAGCCTCCTCATTCAGGCGGTCGCTGATGGATTGTTCTGGCGTGGGATTGAGAGTTCACATATGACTAAGTGAACCGAGCTAACAGGGCCAGGTTCCCTAACAAATGAAAAAGAGCGAAGCGCTGAGCAGCTTCAGAAACCCTCGACCCCTGTGTGGCTCCAGGCGGCTCCGCAGGGCTCATCAGTGGACCGGGACGAGCCTCTGAACAGCAGCCGCTCGGTGGTGGACGGAGATCCTGATAATGAGGAGAGCAGCGGGTACGAGGACGCACCGTCAGAGTTCACCGCCACTCCAGACAGAGACCCTCTGGACACCGAAGAAGACCCGGAGAATACCCCGAGCAGCGGCCCCAATCCCGGAGACTCCTGCGCTCTCTGCTGAGTCACACACAGCCCAGCCGCTGTCTGGAACTACTGTCAGCTCACAACACGCTACACTGTTCACACACACCGCTGCTCACGCGGCTCAGAGGATCTGCTCGTACTGACCGATTTAATTCATCTCTATAGTATGAAGTCTGTAATGACCAACATCTGCCCCTGAACCCTGCCCACACCAGAGACATGACACCCCCCCCATCAGATCATGCTATCAGCAccgtatttgaatggttctgggattggggttagggattaggtaggttaggcCAATATTACAGCTTCACATCACACTACTCCACATCAACATTTACACTGGCAGCATATTCAATCATCAAAATGTGCTGCCTACTTTATAAATCTGACAAGGCAGGAGAAATCCTGCAAACGCTATATCCCTACAGCACGCTCACTGGACTGAACCACTCCTCTCTCTAATGCATACAGTAGATGCAGACGCCTGATGTACAGCGGGAACACAGCTTCTGTTCATGAGTGATGAGTTCATCAGCTTTACTGAGAGACTCTGGAGAAATCCGCACATCTCTGCTCATTATTCCATCTGCTTTATTACTACTAGTGTGTGTTACAGGGATGTTCAGCGTGTTATTAAACACGAGCTGTTACTCATGATCACGACTTAAACCTTGAGTCTGTGTCTCTGAGGGACCAACACATCATCTATTGTCTTGAGAACAgtagaggagaggagaggagaggagaggagaggagaggagagggtTTCTCTGCTGTGCCAGTAGAATATCTCATCTAGCGTCTCATTCTAAAACATCCTTCACACGCAGCCTCACTGAATCTGTGTAGTAAGTGCTTATGAATGAACATTTGACACTGGAACATGTGAAGCATCTGATTTCCCCACACTTCTGCACAGTTTATACTCATGCTGGATGACTACGATTATGTAGGAGATGttttatattgctgtttttacataCAGAAGCTCTGTTGGCTCTAATAATCTCACACTTTAGATTTTGTAGAagcgatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcagtcagtctgtctgtctgtctatctatcagtcagtcagtgagcTTCTATAAGTCAGATCCTGAGTGTGAAGTCTTTAAACACTGATTTCTGATTTGTCATGACCGTAATCAGCTGTCAGACCCGCCGGCAGTTCTCAATCTTGCAATTGCTGAATTTATTGTAAAATCTCACACTTTTTGTCTATTTCTACAGATTTCCTGCATATTTTGGGTGGTCAGCAGGACGCTGTtcacatttctctctctctacaACACGCCATCAGCACAGTGTTACGTACAAAAACACAAGCACATAAGATATTTGGAATATTAATCTGAAAAAAGCCATAAAATTGGCTGCAAATTTCCTAAAATCTGCCCACATCATCTGCCGTTTTCAGAGTAGGATTGAGAGATTTTGCTGGAGGGTCTGACTGCTGCTGTTCATGAGGAGTGATGGAGCGTCTTCAGCTCTCAGGTCAACACTTGAGCGTTTGTTTACTTCTGCTTTTGTATTGTGTGATTGTGGAAGGGGATTAGATCTGTTAGTTCTCGCGGGGGATGATGGGAAGCTTCTGTTCTGTGTTCAGTGAACGTGTTTTAATGCGTATGAAATGATTATTGGTTTTATTAATGGATGTCAGCAGATTGTGAGGTCAGAGCTCATGCTCAACGTGTGATTTGTATGATCATCTTCTGTTCATATCCAGGAATGTCTGATCTAATAAATGATTGCTTTACATTGTGTTGTCATGGTTCAGTGCTGTTCAGTGTGCTGTTCATCCTAATGTGAAGTGAATCTTCTCCAGTGTGGATTAGTGTGTGTCCATCCTTGTTAAAGCGGCTTTACACAGCAGCAGAAATTAAACAGAGGCAGAATAACTTCATTAAGTCCCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0006396 RNA processing biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006397 mRNA processing biological_process
GO:0006403 RNA localization biological_process
GO:0050657 nucleic acid transport biological_process
GO:0050658 RNA transport biological_process
GO:0006412 translation biological_process
GO:0051236 establishment of RNA localization biological_process
GO:0048592 eye morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0042255 ribosome assembly biological_process
GO:0006518 peptide metabolic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008438 lncRNA downstream 1849 178319 ~ 183325 (-) True XLOC_003779
TCONS_00008437 lncRNA downstream 17723 162935 ~ 167451 (-) True XLOC_003778
TCONS_00008723 lncRNA downstream 56008 128255 ~ 129166 (-) True XLOC_003776
TCONS_00008722 lncRNA downstream 56019 128158 ~ 129155 (-) False XLOC_003776
TCONS_00007275 lncRNA downstream 113634 61190 ~ 71540 (-) True XLOC_003773
TCONS_00008439 lncRNA upstream 5620 193460 ~ 194715 (-) True XLOC_003781
TCONS_00008725 lncRNA upstream 181287 369127 ~ 369686 (-) True XLOC_003788
TCONS_00007306 lncRNA upstream 295415 483255 ~ 486328 (-) True XLOC_003794
TCONS_00007311 lncRNA upstream 357621 545461 ~ 548398 (-) True XLOC_003797
TCONS_00007314 lncRNA upstream 378383 566223 ~ 570421 (-) True XLOC_003796
TCONS_00007285 mRNA downstream 1846 169394 ~ 183328 (-) False XLOC_003779
TCONS_00007284 mRNA downstream 19856 161196 ~ 165318 (-) False XLOC_003778
TCONS_00007283 mRNA downstream 19886 161196 ~ 165288 (-) False XLOC_003778
TCONS_00007282 mRNA downstream 43582 135249 ~ 141592 (-) True XLOC_003777
TCONS_00007281 mRNA downstream 57389 122634 ~ 127785 (-) True XLOC_003775
TCONS_00007287 mRNA upstream 32704 220544 ~ 236766 (-) True XLOC_003782
TCONS_00007288 mRNA upstream 72923 260763 ~ 270210 (-) False XLOC_003783
TCONS_00007289 mRNA upstream 77519 265359 ~ 270210 (-) True XLOC_003783
TCONS_00007290 mRNA upstream 88217 276057 ~ 279328 (-) False XLOC_003784
TCONS_00007291 mRNA upstream 88218 276058 ~ 277599 (-) True XLOC_003784
TCONS_00007296 other upstream 161273 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007304 other upstream 271975 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007326 other upstream 735955 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 881566 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3765883 3953723 ~ 3953837 (-) True XLOC_003853

Expression Profile

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