RNA id: TCONS_00008722


Basic Information

Item Value
RNA id TCONS_00008722
length 258
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id XLOC_003776
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 128158 ~ 129166 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGTCTGCCAGCGCAGCAGAGATCAATGGTCGGCTGCTGATCAGAGGAGCCGCTGATTATTGAGATTAAAGGCGTTAATCAGCGCAGAGCCTCCGGTGCCGAAGCGCTGACAGCGGCACAGAGAGCAGGAGCAGCCGCcgccatcaccatcatcatcaccttCATCACCACAGCTGAACAACAGCCCAGCCGGTGAACGACATAATGCACAGCGGCTCATCCTGATCTACAGCAACACTCCACCGACCCGCAGCTGAC

Function

GO:

id name namespace
GO:0048762 mesenchymal cell differentiation biological_process
GO:0010718 positive regulation of epithelial to mesenchymal transition biological_process
GO:0060485 mesenchyme development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007276 lncRNA downstream 56618 61190 ~ 71540 (-) False XLOC_003773
TCONS_00007275 lncRNA downstream 56618 61190 ~ 71540 (-) True XLOC_003773
TCONS_00008721 lncRNA downstream 71395 52872 ~ 56763 (-) True XLOC_003772
TCONS_00008720 lncRNA downstream 74602 52872 ~ 53556 (-) False XLOC_003772
TCONS_00008437 lncRNA upstream 33780 162935 ~ 167451 (-) True XLOC_003778
TCONS_00008438 lncRNA upstream 49164 178319 ~ 183325 (-) True XLOC_003779
TCONS_00007286 lncRNA upstream 54415 183570 ~ 190461 (-) False XLOC_003780
TCONS_00008724 lncRNA upstream 56019 185174 ~ 187840 (-) True XLOC_003780
TCONS_00008439 lncRNA upstream 64305 193460 ~ 194715 (-) True XLOC_003781
TCONS_00007281 mRNA downstream 373 122634 ~ 127785 (-) True XLOC_003775
TCONS_00007278 mRNA downstream 25001 89394 ~ 103157 (-) False XLOC_003774
TCONS_00007280 mRNA downstream 25022 102605 ~ 103136 (-) True XLOC_003774
TCONS_00007279 mRNA downstream 26400 99257 ~ 101758 (-) False XLOC_003774
TCONS_00007277 mRNA downstream 30341 88247 ~ 97817 (-) False XLOC_003774
TCONS_00007282 mRNA upstream 6094 135249 ~ 141592 (-) True XLOC_003777
TCONS_00007283 mRNA upstream 32041 161196 ~ 165288 (-) False XLOC_003778
TCONS_00007284 mRNA upstream 32041 161196 ~ 165318 (-) False XLOC_003778
TCONS_00007285 mRNA upstream 40239 169394 ~ 183328 (-) False XLOC_003779
TCONS_00007287 mRNA upstream 91389 220544 ~ 236766 (-) True XLOC_003782
TCONS_00007296 other upstream 219958 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007304 other upstream 330660 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007326 other upstream 794640 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 940251 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3824568 3953723 ~ 3953837 (-) True XLOC_003853

Expression Profile

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