RNA id: TCONS_00008720


Basic Information

Item Value
RNA id TCONS_00008720
length 420
lncRNA type sense_over
GC content 0.56
exon number 2
gene id XLOC_003772
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 32007 ~ 56763 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTCGCCTGTGTTAGCTCTGCTGTAATGGGACGCAGCCGCTGCAGGAGCCGGGGAACACTATAGAGCTGAGCTGCAGACGTGTTTGACATGAGGTGTGATGTGGGGGTGCCGGGTGTTGATGAGGGCTGTGGTTATAACCTGTCTGAACACGGCTGATGGTTTCTTCAGCTCATTACTCTCGGCTGCTGCTCGTCTTCATGCTCAAACGCTGTTAAATGTTTAATTGTGTGGAGGAATCTGAGCTCTCTCGCCGACAGATTAAAGCTCTCTCTGACGGATCcgtgtgcttgtgtttgttcTGCAGGGTCCGATGGGCCCCCGAGGACCCCCAGGCCCCAACGGAGCTCCGGGTCCTGAAGGATTCCAAGGAAACCCAGGAGAAGGCGGAGAGCCGGGATCATCCGTATGTCTGAGCGAG

Function

GO:

id name namespace
GO:0001501 skeletal system development biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0030199 collagen fibril organization biological_process
GO:0033333 fin development biological_process
GO:0033334 fin morphogenesis biological_process
GO:0030903 notochord development biological_process
GO:0031012 extracellular matrix cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005615 extracellular space cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007276 lncRNA upstream 7634 61190 ~ 71540 (-) False XLOC_003773
TCONS_00007275 lncRNA upstream 7634 61190 ~ 71540 (-) True XLOC_003773
TCONS_00008722 lncRNA upstream 74602 128158 ~ 129155 (-) False XLOC_003776
TCONS_00008723 lncRNA upstream 74699 128255 ~ 129166 (-) True XLOC_003776
TCONS_00008437 lncRNA upstream 109379 162935 ~ 167451 (-) True XLOC_003778
TCONS_00007270 mRNA downstream 24125 23970 ~ 28747 (-) False XLOC_003771
TCONS_00007268 mRNA downstream 24648 19668 ~ 28224 (-) False XLOC_003771
TCONS_00007273 mRNA downstream 24969 24359 ~ 27903 (-) True XLOC_003771
TCONS_00007271 mRNA downstream 24988 23985 ~ 27884 (-) False XLOC_003771
TCONS_00007269 mRNA downstream 25000 23827 ~ 27872 (-) False XLOC_003771
TCONS_00007277 mRNA upstream 34691 88247 ~ 97817 (-) False XLOC_003774
TCONS_00007278 mRNA upstream 35838 89394 ~ 103157 (-) False XLOC_003774
TCONS_00007279 mRNA upstream 45701 99257 ~ 101758 (-) False XLOC_003774
TCONS_00007280 mRNA upstream 49049 102605 ~ 103136 (-) True XLOC_003774
TCONS_00007281 mRNA upstream 69078 122634 ~ 127785 (-) True XLOC_003775
TCONS_00007296 other upstream 295557 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007304 other upstream 406259 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007326 other upstream 870239 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 1015850 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3900167 3953723 ~ 3953837 (-) True XLOC_003853

Expression Profile

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