RNA id: TCONS_00007268


Basic Information

Item Value
RNA id TCONS_00007268
length 2595
RNA type mRNA
GC content 0.59
exon number 6
gene id XLOC_003771
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 19668 ~ 28747 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACACCCTGCTGGAGAACCTGCTGATCCAGAGGGAGAGGAGGCACTAAggacactctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcgggccGCAGCTGGGCTCTCAGTATCTCAGACTCGCACACTGGATGATAAGAAAGTATTCTGAACGGCCAAATGTCAAGAGTAGAACCGAAGAAGCCCATTGGCTGCGGCCACAGCGACTCGTCTTCTGATTGGCTCGTCGCTCCGCCGCTTTGACTCTGGCCTTTCTGTTCATCAAGTTCGGTTGAGTTGTTTGAGAGTTCATGTCAGACTTGAAGAAGCGTGAAAAACTCGCGCCCTCGCACAGAATGAGCGatccaCAGAAGAGCTCCATGGCGGACTCAGAGCCCGGCTTCCCCCAGAAGAGCAGCTCCAGCTCGGCGCAGGACTCGCAGCAGCCATCACCGCTAGCACTGTTAGCCGCTACGTGCAGTCGCATCGATGAGAACGGCGCGGCGGAGCCTCAGACACGGCAGGACTCTCAGCTGGAGCTCCCGCAGGGCACCAATGGCTGGCACATCAGCCCTGCAGGCACACAGACGCCCACCAGTGCACCTGCCGCAGTGCCCACAGCGCCCTCAGAGGAGCGGAGCAGAGCCGCCACCGCCACTATACAGCCGCAGTTCCTGATGCCCGCACAGAGCCAGCAGCTGCTCACTGCCCTGCCCGGCGTCATGCCCAACATCCAGTACCAGGTGATCCCGCAGTTCCAGACGGTGGACGGGCAGCAGCTGCAGCTCCAGGCAGCGCAGGACATGTCTGGGCAGCTGTTGGTGTCGTCCCCCGGCGGGCAGCAGCTCCGGGCAGCAGGCAGCGGGAACATCCTGACGGTCCCGGGCCTCTTCCAGCAGGCCATTCCTCTGCAGAACCTGAGCGCCGTGCTGCCCAACCAGACGCAGTTCCTGGCCAACGTGCCGCTGAACGCCAACATCACACTGCTGCCGGTGGGGCCCGGGCCCGTAGGCGGAGACACACACACTGCGGTAGCCGCTCCGCCGCAGGGCCCTGAGTTCTGCAGCACCGCCTCCAGCACACGGGCAACAGCAGCAGTGGGCATCGCCACCCTCGCCCAGAGCAGAGCGCCCGCCGCCTCAGACGGGCAGAAGGGGCAGCCGCAGATGCTCCTGCAGGGGGTTCAGCAGGGCGCGGTGTCGGCCCCGGGGCCCGTCTTCACCACACAGACCCTCTCTCAGGACGGCGTGCAGAACGTGCAGATCCAGACCATCGCCAGCGGCAGCCCAATCCTGATCCGCACGCTGGGCGCCGACGGGCAGGTGAGCTGGCAGACGCTGCAGCTGCAGAGCCCCGGTGCCCAGATCACACTGGCTCCCACTGGGGCCTCGGGGCCCGTGCAGCTCTCCGGCCTGCAGACCATCAACCTCAACACACTGGGCAGCGGCGGCCTGCAGATGCAGCCGATACAGATGCCCGTCACCATCGCCAGCGCACCAGGTGAAGCGGCTGCAGACGCTCTGGAGGACAGCGCAGTGCTGGAGGAGAATGCAGAGAGCAGCCCGAACACAGCCAGCAGCAGACGCACACGCAGAGAGGCCTGCACATGCCCCTACTGTAAAGATGGAGAGGGACgAGACCCCAGTAAGAAGAAGCAGCACATCTGCCATATCCCCGGCTGTGGTAAGGTGTACGGGAAGACGTCTCACCTGCGGGCGCACCTGCGCTGGCACACCGGCGAGAGACCCTTCGTCTGCTCCTGGTCCTTCTGCGGGAAACGCTTCACACGCTCCGACGAGCTGCAGagacacaagcgcacacacaccgGAGAGAAGAAGTTCTCATGTACGGAGTGCCCGAAGCGCTTCATGCGCAGTGATCATCTCTCCAAACACATAAAGACACACCTTAACAAGAAGGTGTGTGTGAGCGCGTGCAGTGACCCCGTGACCCCGGCTGCAGATGCAGACCCACAGACACTGCTGACGGTGGACTCCCTCTCAGCCGACAGCTTCACCAGACTGCCCGGCGGGATCAGTGTGATGCAGGTGACGGATCTGCAGTCCATCGGCCTCAGCGGCAGCAACGGATTctagcgcgcacacacacacacaggaagcgGACAGATGTGTATTCCTCTTTTTAATCTCTGATTCTCTGCTCCGCCATCATGCTTTCCTCCATTAATCGGTCGAGCAGACGCAGCTGAAGGCTTCTGCTTTTGTACATAAGTTATATTTTTGTAAGGAGATCTGCGATTTCTGACTTTGTGTTGTTCTGCAGTCGTGAACGCAGCGTtttttattatgtagatgtggTATAACTCTCGTTttgtgctcacacacacacacacacacacacgcacgcgtcCTCTGTTACAGCCGCTCTCCCGCTCGCCCTCGTCTGACAGtggacatgttttgtttttggggAATGTCGAGATTCAGATGCCTTAACGTCTTCCTTTCCTGAAGACTCTTTTATGAATTTGAGTTGAAACCAAAGCTCTCCTCTTCCATGTTAACTCAGGTGAATGTTTCTCTTCATGATTATTAAATTAAGATGAACTCGCA

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04350 TGF-beta signaling pathway
ko04137 Mitophagy - animal
ko04915 Estrogen signaling pathway
ko04928 Parathyroid hormone synthesis, secretion and action
ko04927 Cortisol synthesis and secretion
ko05200 Pathways in cancer
ko05202 Transcriptional misregulation in cancer
ko05231 Choline metabolism in cancer
ko05224 Breast cancer
ko05163 Human cytomegalovirus infection
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05415 Diabetic cardiomyopathy
ko04934 Cushing syndrome
ko01522 Endocrine resistance
ko03000 Transcription factors
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-030131-2829 Enables DNA-binding transcription factor activity and double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in brain; liver; spinal cord; and testis. Orthologous to human SP1 (Sp1 transcription factor).

Ensembl:

ensembl_id ENSDART00000124104

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008720 lncRNA upstream 24648 52872 ~ 53556 (-) False XLOC_003772
TCONS_00008721 lncRNA upstream 24648 52872 ~ 56763 (-) True XLOC_003772
TCONS_00007276 lncRNA upstream 32966 61190 ~ 71540 (-) False XLOC_003773
TCONS_00007275 lncRNA upstream 32966 61190 ~ 71540 (-) True XLOC_003773
TCONS_00008722 lncRNA upstream 99934 128158 ~ 129155 (-) False XLOC_003776
TCONS_00007266 mRNA downstream 1219 13179 ~ 18449 (-) False XLOC_003770
TCONS_00007267 mRNA downstream 1414 13205 ~ 18254 (-) True XLOC_003770
TCONS_00007264 mRNA downstream 7321 6902 ~ 12347 (-) False XLOC_003769
TCONS_00007263 mRNA downstream 7349 6899 ~ 12319 (-) False XLOC_003769
TCONS_00007265 mRNA downstream 7435 7393 ~ 12233 (-) True XLOC_003769
TCONS_00007274 mRNA upstream 3783 32007 ~ 55224 (-) False XLOC_003772
TCONS_00007277 mRNA upstream 60023 88247 ~ 97817 (-) False XLOC_003774
TCONS_00007278 mRNA upstream 61170 89394 ~ 103157 (-) False XLOC_003774
TCONS_00007279 mRNA upstream 71033 99257 ~ 101758 (-) False XLOC_003774
TCONS_00007280 mRNA upstream 74381 102605 ~ 103136 (-) True XLOC_003774
TCONS_00007296 other upstream 320889 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007304 other upstream 431591 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007326 other upstream 895571 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 1041182 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3925499 3953723 ~ 3953837 (-) True XLOC_003853

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00008762 True 4669 mRNA 0.55 5 CM030126.1 11062287 ~ 11073591 (-)