XLOC_003773 (CABZ01072245.1)


Basic Information

Item Value
gene id XLOC_003773
gene name CABZ01072245.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 61190 ~ 71540 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007276
gtGTCAGTGATGATCTACCCAGAGATCGGGCTGTCAGATCAGTATGGCGTCCCCTGGTGGATCATCCTCATCGCTGTCCTGGCTGGAGTGCTTGTGCTGGCGCTGCTCGTGTGTTTACTGTGGAAGTGTGGTTTCTTCAAGCGTGCGGAGCGGCAGCCGCAGTATGAAACGGAGTATCACTGCGCTCACCTGCAGCAGCAGCCGTCAGACGCCGAGCGGAAACACACCGAGCTGCAGTGAGGGCTCGTCACAGCACCTGCAGACGCTCACGTGTGGTTTCTTCAGAAGGGTTCGGCATGAAGATCAGGTTCCTCAGTATCAGGCGGTGAAGATCATGCGGCGGGACGCTCCACTGCTGGACGACACACTCATTCTGCACAAACGGCAGTGGGCGACACACTGGAGCCAGGGGTCCATCTGagactgcagacacacacacacacacacacacacacacacacactcattgaaGAGGAACACACACTCATGTGGAGAGTTGACCAGCTTTCCCTCAGGATCTGCAGGCTGACAGGAGACGTCTGGAGTAGCGCTGCATCTGGCTGCAGGCTGATCCTCGGTCAGTGGATATTAACAGATGCAGGGTCGTCAGGGCTGAGGGATCACGCGTCTGCAGGAGCTTCCAGCATCAGCTGAACACAGAAGAGGATATTCTGCAGATGAACACTGGAGGTCTGCGGGTCTCCAGCATCTCCAGAATATCTGCTGTAGTGTTGATCAGATCAATGAAGCTGTGGAGATTAAATTGATGATGACAGAATAATATCTGGGTGAATTAACCCTTTCAGACGGTTATTGATGtgtagaggtgtgtgtgtgtgtgtgtgtgtgtgtgaactcatGAAGCCGCTGCAGTTCTTCTGTTCTTCAGGCTTTTGGACATTGAGCTTTACTCGTCTGCTCTTCATGCTCTCCTCACGGCTTCATTGCCCTTTCGCACTGAGTTATATGAACATTAGAGTGTGTTACAGTATCCGTGAGCTGTTCCTCAGTGTTTTGCACAGGCGTCTGCCGCTCTGCTCTGATCATGTGCCGCTGTCTGCTTTATTTATTGCTGATGTTGATCTGAGTATGTTGTCCTGTTCCTCCATTGATCGGTCCAGTTCAGCAGATCCTCAGGACAGTATAGTGTTGCTCAGATGATGAGgagtgtgtgttctgtgtgcTTCTGTCATGTGTCTTTGTACACTGAAATCAACAAGTAAAATGTTCAACTCTAGTTCAGTCGATCGCCTGCTTTACAGTCTTTACCTGTTCCCTGAACATGAATTTGTgaaggtgatgatgatgatgattgttatgattattattatgtgttgAGGAAGAAGTTCCTGCATCTGTTCTCCTTCACTACAGCTTTGGCTGTTTACTCTCTGCTGTCCTTCCAGATCTGTCAGTTCCTGTTTTGTCCGCTAGATGTCGCCgtctcagttcagttcagttcagtcagaggtgaacacacacacacacacacacgaagaaAACATCTGTGTTTTTCTGAAAGCTGCAGGACTGATTGGAAGCAGGTGAGCTGATCACAGCAGCTCctggagaatgtgtgtgtgtctttcccAAACTCCTGCCAGAGAGAAGCTGATCCAGAACTGATgaactctctctctgtctctctctctctctctgtctctctccctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctcattatagcTGCATTGTCGTTATATCACAGCGCACTGATTGATTATACTGATATATGGACATATTGAGCTAAGCAGACAGTAAATCTAGAGCAATGATATAATCgattattaaacaatataatatagaATGTATATGAAATATTGAACTGGTTTGAGATAACAGTAATTATTGTAGTGTAAGTGTTCCCACACTGATCCTCATCTCTACAGGTTTCCTCTGGATTCAGTGGTGACCGTGTGGTGAGTGGAGTAAAC
>TCONS_00007275
gtGTCAGTGATGATCTACCCAGAGATCGGGCTGTCAGATCAGTATGGCGTCCCCTGGTGGATCATCCTCATCGCTGTCCTGGCTGGAGTGCTTGTGCTGGCGCTGCTCGTGTGTTTACTGTGGAAGGTATGTGTgtacctgaacacacacacacacacacacacacacacacacacacacacactgcacagatAATGCACCGACTGGATGTTCCTATGTAGTGTAGCTGTTCCTGGCCATGGCGGTGCTGGTCCAGTCCTCCACGGTCAATAGAGTGTCTCGTCATGACCCGTAGACTGATTCGAGTCGTTTAGAGCTGTAATTCTCAGATTCTGCTCCTTCTTTCTTCGCTCTCCCTCATGTTCCTCACACCTCACTTCCTTTCCCACTCAGGAAGTAAATACGTGCTGTAAATGTCTAGCGCAGCATCAGGGTGTGACAGTATTAGTCCTACAGGAGTGTTCTCAGAAGTGCACACAGTAGATCAGGGTGGGCCACTTCATACACTCGTCTCTCATCATCTGTTAACTCTGTTCATCTCTGATGCTTTAACCACACTCTGCTGTTATTCCTTCTCCTTCCTCTTCCTCATCATCTTCCTCGTTATCCTCTACCTCTTCTTCTTGCTCTTCTTCCCCCTCTCCCTCCTCCTctcgtgtgtgtgtctgttctctGTTGCCCTCTGCTGGATCAGTGTGGTTTCTTCAAGCGTGCGGAGCGGCAGCCGCAGTATGAAACGGAGTATCACTGCGCTCACCTGCAGCAGCAGCCGTCAGACGCCGAGCGGAAACACACCGAGCTGCAGTGAGGGCTCGTCACAGCACCTGCAGACGCTCACGTGTGGTTTCTTCAGAAGGGTTCGGCATGAAGATCAGGTTCCTCAGTATCAGGCGGTGAAGATCATGCGGCGGGACGCTCCACTGCTGGACGACACACTCATTCTGCACAAACGGCAGTGGGCGACACACTGGAGCCAGGGGTCCATCTGagactgcagacacacacacacacacacacacacacacacacactcattgaaGAGGAACACACACTCATGTGGAGAGTTGACCAGCTTTCCCTCAGGATCTGCAGGCTGACAGGAGACGTCTGGAGTAGCGCTGCATCTGGCTGCAGGCTGATCCTCGGTCAGTGGATATTAACAGATGCAGGGTCGTCAGGGCTGAGGGATCACGCGTCTGCAGGAGCTTCCAGCATCAGCTGAACACAGAAGAGGATATTCTGCAGATGAACACTGGAGGTCTGCGGGTCTCCAGCATCTCCAGAATATCTGCTGTAGTGTTGATCAGATCAATGAAGCTGTGGAGATTAAATTGATGATGACAGAATAATATCTGGGTGAATTAACCCTTTCAGACGGTTATTGATGtgtagaggtgtgtgtgtgtgtgtgtgtgtgtgtgaactcatGAAGCCGCTGCAGTTCTTCTGTTCTTCAGGCTTTTGGACATTGAGCTTTACTCGTCTGCTCTTCATGCTCTCCTCACGGCTTCATTGCCCTTTCGCACTGAGTTATATGAACATTAGAGTGTGTTACAGTATCCGTGAGCTGTTCCTCAGTGTTTTGCACAGGCGTCTGCCGCTCTGCTCTGATCATGTGCCGCTGTCTGCTTTATTTATTGCTGATGTTGATCTGAGTATGTTGTCCTGTTCCTCCATTGATCGGTCCAGTTCAGCAGATCCTCAGGACAGTATAGTGTTGCTCAGATGATGAGgagtgtgtgttctgtgtgcTTCTGTCATGTGTCTTTGTACACTGAAATCAACAAGTAAAATGTTCAACTCTAGTTCAGTCGATCGCCTGCTTTACAGTCTTTACCTGTTCCCTGAACATGAATTTGTgaaggtgatgatgatgatgattgttatgattattattatgtgttgAGGAAGAAGTTCCTGCATCTGTTCTCCTTCACTACAGCTTTGGCTGTTTACTCTCTGCTGTCCTTCCAGATCTGTCAGTTCCTGTTTTGTCCGCTAGATGTCGCCgtctcagttcagttcagttcagtcagaggtgaacacacacacacacacacacgaagaaAACATCTGTGTTTTTCTGAAAGCTGCAGGACTGATTGGAAGCAGGTGAGCTGATCACAGCAGCTCctggagaatgtgtgtgtgtctttcccAAACTCCTGCCAGAGAGAAGCTGATCCAGAACTGATgaactctctctctgtctctctctctctctctgtctctctccctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctcattatagcTGCATTGTCGTTATATCACAGCGCACTGATTGATTATACTGATATATGGACATATTGAGCTAAGCAGACAGTAAATCTAGAGCAATGATATAATCgattattaaacaatataatatagaATGTATATGAAATATTGAACTGGTTTGAGATAACAGTAATTATTGTAGTGTAAGTGTTCCCACACTGATCCTCATCTCTACAGGTTTCCTCTGGATTCAGTGGTGACCGTGTGGTGAGTGGAGTAAAC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0022610 biological adhesion biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0006941 striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0070831 basement membrane assembly biological_process
GO:0009888 tissue development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031589 cell-substrate adhesion biological_process
GO:0014902 myotube differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0008015 blood circulation biological_process
GO:0071711 basement membrane organization biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0007155 cell adhesion biological_process
GO:0060047 heart contraction biological_process
GO:0043256 laminin complex cellular_component
GO:0042383 sarcolemma cellular_component
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0016528 sarcoplasm cellular_component
GO:0016529 sarcoplasmic reticulum cellular_component
GO:0005882 intermediate filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005604 basement membrane cellular_component
GO:0005901 caveola cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0005912 adherens junction cellular_component
GO:0005924 obsolete cell-substrate adherens junction cellular_component
GO:0031672 A band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0070161 anchoring junction cellular_component
GO:0030054 cell junction cellular_component
GO:0030055 cell-substrate junction cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0003779 actin binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117448

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007276 False 1988 lncRNA 0.48 3 61190 71540
TCONS_00007275 True 2556 lncRNA 0.48 2 61190 71540

Neighbor

gene id symbol gene type direction distance location
XLOC_003772 col2a1b coding downstream 4427 32007 ~ 56763 (-)
XLOC_003771 sp1 coding downstream 32443 19668 ~ 28747 (-)
XLOC_003770 prr13 coding downstream 42741 13179 ~ 18449 (-)
XLOC_003769 MYG1 coding downstream 48843 6899 ~ 12347 (-)
XLOC_003774 elmo2 coding upstream 16707 88247 ~ 103157 (-)
XLOC_003775 arfgap1 coding upstream 51094 122634 ~ 127785 (-)
XLOC_003776 NA coding upstream 56618 128158 ~ 129166 (-)
XLOC_003777 cdk4 coding upstream 63709 135249 ~ 141592 (-)
XLOC_003778 tegt coding upstream 89656 161196 ~ 167451 (-)
XLOC_003938 BX324177.10 misc upstream 11267264 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 11296054 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 11298915 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 11309364 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 11312293 11383833 ~ 11384130 (-)
XLOC_003780 CU633745.1 non-coding upstream 112030 183570 ~ 190461 (-)
XLOC_003781 NA non-coding upstream 121920 193460 ~ 194715 (-)
XLOC_003787 CR855375.2 non-coding upstream 277573 349113 ~ 351701 (-)
XLOC_003788 NA non-coding upstream 297587 369127 ~ 369686 (-)

Expression


Co-expression Network