RNA id: TCONS_00008437


Basic Information

Item Value
RNA id TCONS_00008437
length 985
lncRNA type sense_over
GC content 0.55
exon number 7
gene id XLOC_003778
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 161196 ~ 167451 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAGAAACACACAGACGGGAAGAGACGCGATTGACGGCTTATGGTGATTCTGTGATCAGTGAAGAAGTGCAAAATGAACGTGTTTGATCGCAACATAAACTTCGACGCTCTCTTTAAATTCTCTCAGATctcgcGCTCCACTCAGCAGCACCTGAAGAATGTCTATGCCAGTCTGGCGGTGTGTATGCTGGTGGCCACGGCCGGCTCCTACATCTACGTCGTCACCAGAATCTTCCagGGTGGTCTGACCATGCTGGGCTCTCTGGCCATGATGGCGTGGCTGGCCATGACGCCTCACAGCCCACAGACAGAGAAGAAGAGGCTGGCCATCCTGGCGGCGTTCGCCTTcttcacagGTCTGGGACTCGGGCCGCTCATGGACTACGCCATCAGCATTGACCCCAGcatcaTCGTGACTGCGTTCCTGGGCACCTCCATCATCTTCAGCTGCTTCACCCTCAGTGCGCTCTACGCTCAGCGCAGGAGCTACCTGTTCCTtggagGAACTCTGATGACGGGTCTAACGGTCCTGCTGCTCGTCTCCATCCTCAACATGTTCTTCGGCTCCGTCCTCATCTTCAAGGTGTGTGTGTAACTGGGTGTTTGCAGCAGATGCGGCTCGTCAGGGCgcttgaacattttgagtttacctGTTTCAGTCGCGTGTGAAACTGACTTCACGGCAGACGTGTGAAAGATGGTGTATATTCGCTCTGCGCCGTGTCTGGCTCCATCAGGCTCTTCAGAGGTGCAGTCTGAGCTCATACACACTGCTGCTTCCGCTCTCAgtgtgtcggctggaggattccCCTCGGGATGTCCACTACAGGCGCCGCGTCACAATCACAGCTTTACTCGAGAGAGCTCCAGACTGGTCAACACAGTGCAAATGACCGCCAAAGTTCAGATTTATCTCAGCAAGTGTGTCAAGCTCCTCAAACACTCGATTCACACTGAATCACTCGCTGGAGTCGCGCCGCTCGC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko05130 Pathogenic Escherichia coli infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008723 lncRNA downstream 33769 128255 ~ 129166 (-) True XLOC_003776
TCONS_00008722 lncRNA downstream 33780 128158 ~ 129155 (-) False XLOC_003776
TCONS_00007276 lncRNA downstream 91395 61190 ~ 71540 (-) False XLOC_003773
TCONS_00007275 lncRNA downstream 91395 61190 ~ 71540 (-) True XLOC_003773
TCONS_00008721 lncRNA downstream 106172 52872 ~ 56763 (-) True XLOC_003772
TCONS_00008438 lncRNA upstream 10868 178319 ~ 183325 (-) True XLOC_003779
TCONS_00007286 lncRNA upstream 16119 183570 ~ 190461 (-) False XLOC_003780
TCONS_00008724 lncRNA upstream 17723 185174 ~ 187840 (-) True XLOC_003780
TCONS_00008439 lncRNA upstream 26009 193460 ~ 194715 (-) True XLOC_003781
TCONS_00008725 lncRNA upstream 201676 369127 ~ 369686 (-) True XLOC_003788
TCONS_00007282 mRNA downstream 21343 135249 ~ 141592 (-) True XLOC_003777
TCONS_00007281 mRNA downstream 35150 122634 ~ 127785 (-) True XLOC_003775
TCONS_00007278 mRNA downstream 59778 89394 ~ 103157 (-) False XLOC_003774
TCONS_00007280 mRNA downstream 59799 102605 ~ 103136 (-) True XLOC_003774
TCONS_00007279 mRNA downstream 61177 99257 ~ 101758 (-) False XLOC_003774
TCONS_00007285 mRNA upstream 1943 169394 ~ 183328 (-) False XLOC_003779
TCONS_00007287 mRNA upstream 53093 220544 ~ 236766 (-) True XLOC_003782
TCONS_00007288 mRNA upstream 93312 260763 ~ 270210 (-) False XLOC_003783
TCONS_00007289 mRNA upstream 97908 265359 ~ 270210 (-) True XLOC_003783
TCONS_00007290 mRNA upstream 108606 276057 ~ 279328 (-) False XLOC_003784
TCONS_00007296 other upstream 181662 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007304 other upstream 292364 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007326 other upstream 756344 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 901955 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3786272 3953723 ~ 3953837 (-) True XLOC_003853

Expression Profile

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