XLOC_003786 (poc1a)


Basic Information

Item Value
gene id XLOC_003786
gene name poc1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 306007 ~ 309420 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007293
GAAGGGAGAGTCGGTGTTGTTCAGAGCACACACAGGATCGGTGCGCAGTGTGTGTTTCTCCGCTGACGGTCAGTCGCTCCTCACAGCATCTGATGATCAGAGCATCAAACTGTGGAGCGTCCATCGCCAGAAGATCATCTGCACACTCAGAGAACACAACAACTGGGTGCGCTGCGCTaggttttcTCCAGACGGTCAGCTGATGGTGTCGGTCAGTGATGACAGAACAGTGAAGCTGTGGGACGCCAGCAGCAGACAGCTCATACACACATTCTGTGAGCCCGgcggg
>TCONS_00007294
gatgaTCCGACACTCGAGCGCAACTTTAAGGGCCACAGAGATGCGATCACCAGCCTGGACTTCAGCCCCCAGCGGCAAACAGATCGCCTCGGGCTCGGTGGATGCCTGTGTGATGGTCTGGAACATGAAGCCTCAGTCGAGGGCCTACAGGTTTACTGGACACAAGGATGCGGTGACGTGTGTGCAGTTTTCTCCGTCTGCTCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttactgttgtctttcttcAGGAAGGGAGAGTCGGTGTTGTTCAGAGCACACACAGGATCGGTGCGCAGTGTGTGTTTCTCCGCTGACGGTCAGTCGCTCCTCACAGCATCTGATGATCAGAGCATCAAACTGTGGAGCGTCCATCGCCAGAAGATCATCTGCACACTCAGAGAACACAACAACTGGGTGCGCTGCGCTaggttttcTCCAGACGGTCAGCTGATGGTGTCGGTCAGTGATGACAGAACAGTGAAGCTGTGGGACGCCAGCAGCAGACAGCTCATACACACATTCTGTGAGCCCGgcggg
>TCONS_00007295
ACGTCTGCGCACGCGCCAAACACGGCGGGTAAATTGAACGCTGTTGCTAACCAACCGCCAGCCCGCGGTGAGCGATTATCTCCGGGTTAACAGCCCTGAAGCCGGCTTTATCCTCTTTATTTGTGCACATCTTCGTCCGCGTGTCTCCCGTGGGTTACTGGAGAATCTCACCGTCTGGAGGACCGCAGCTCTCACAGCAGAGCGGATGTAAACAAACAGAAGATCCGGTTTCATTCATTCACCAACGCTGCAGTTCTTCATCATCAGAGAATAACATGAGCTCtgcgctggatgaTCCGACACTCGAGCGCAACTTTAAGGGCCACAGAGATGCGATCACCAGCCTGGACTTCAGCCCCCAGCGGCAAACAGATCGCCTCGGGCTCGGTGGATGCCTGTGTGATGGTCTGGAACATGAAGCCTCAGTCGAGGGCCTACAGGTTTACTGGACACAAGGATGCGGTGACGTGTGTGCAGTTTTCTCCGTCTGCTCATC

Function

symbol description
poc1a Predicted to act upstream of or within cell projection organization. Orthologous to human POC1A (POC1 centriolar protein A).

GO:

id name namespace
GO:0030030 cell projection organization biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1993 Predicted to act upstream of or within cell projection organization. Orthologous to human POC1A (POC1 centriolar protein A).

Ensembl:

ensembl_id ENSDARG00000078533

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007293 False 289 mRNA 0.56 2 306007 306533
TCONS_00007294 False 547 mRNA 0.52 4 306007 308838
TCONS_00007295 True 496 mRNA 0.55 3 307332 309420

Neighbor

gene id symbol gene type direction distance location
XLOC_003785 slc11a2 coding downstream 18337 281833 ~ 287670 (-)
XLOC_003784 npffl coding downstream 26679 276057 ~ 279328 (-)
XLOC_003783 alas1 coding downstream 35797 260763 ~ 270210 (-)
XLOC_003782 dusp7 coding downstream 69241 220544 ~ 236766 (-)
XLOC_003781 NA coding downstream 111292 193460 ~ 194715 (-)
XLOC_003787 CR855375.2 coding upstream 39693 349113 ~ 351701 (-)
XLOC_003788 NA coding upstream 59707 369127 ~ 369686 (-)
XLOC_003789 CR855375.5 coding upstream 85073 394493 ~ 396724 (-)
XLOC_003790 znf831 coding upstream 101450 410870 ~ 426525 (-)
XLOC_003791 nuf2 coding upstream 120356 429776 ~ 438518 (-)
XLOC_003938 BX324177.10 misc upstream 11029384 11338804 ~ 11339100 (-)
XLOC_003942 BX324177.17 misc upstream 11058174 11367594 ~ 11367890 (-)
XLOC_003943 BX324177.3 misc upstream 11061035 11370455 ~ 11370653 (-)
XLOC_003944 BX324177.4 misc upstream 11071484 11380904 ~ 11381204 (-)
XLOC_003945 BX324177.6 misc upstream 11074413 11383833 ~ 11384130 (-)
XLOC_003780 CU633745.1 non-coding downstream 115546 183570 ~ 190461 (-)
XLOC_003776 NA non-coding downstream 176841 128158 ~ 129166 (-)
XLOC_003773 CABZ01072245.1 non-coding downstream 234467 61190 ~ 71540 (-)
XLOC_003793 CR855375.4 non-coding upstream 150395 459815 ~ 459930 (-)
XLOC_003797 CU695207.2 non-coding upstream 236041 545461 ~ 548398 (-)
XLOC_003799 CABZ01069324.1 non-coding upstream 290020 599440 ~ 601308 (-)

Expression


Co-expression Network