RNA id: TCONS_00007335


Basic Information

Item Value
RNA id TCONS_00007335
length 323
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_003810
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1396170 ~ 1400634 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctctctcttccggTTGTCCTGCGCTTCGTGTGGCAGACGGTGATTAGAAATGGCCAAGTCCAAGAACCACACCACGCACAACCAGTCTCGTAAGTGGCACAGAAATGGCATCAAGAAGCCCAGATCTCAGAGATACGAGTCTCTCAAAGGGGTGGATCCCAAATTCCTGAGGAACATGCGCTTTGCCAAGAAACACAACAAGAAGGGCGCCAAGACCATCGCAAGGAAAGAGGCGTCCAAATAAAGAGGAAAGACCTGCGGAGTCTCCAGTGTacagataatgatgatgatttctACACAATAAAGCCGTGATTTAAGAACGA

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-040801-167 Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL29 (ribosomal protein L29).

Ensembl:

ensembl_id ENSDART00000111140

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008440 lncRNA downstream 307671 1069407 ~ 1088629 (-) True XLOC_003806
TCONS_00008729 lncRNA downstream 307673 1065161 ~ 1088627 (-) False XLOC_003806
TCONS_00007329 lncRNA downstream 307673 1065161 ~ 1088627 (-) False XLOC_003806
TCONS_00007328 lncRNA downstream 377755 1014962 ~ 1018545 (-) True XLOC_003805
TCONS_00008728 lncRNA downstream 410560 931493 ~ 985740 (-) True XLOC_003804
TCONS_00007340 lncRNA upstream 22481 1423111 ~ 1435872 (-) True XLOC_003812
TCONS_00008730 lncRNA upstream 203098 1603728 ~ 1605287 (-) True XLOC_003814
TCONS_00008731 lncRNA upstream 453801 1854431 ~ 1867925 (-) True XLOC_003815
TCONS_00008732 lncRNA upstream 510921 1911551 ~ 1915454 (-) False XLOC_003816
TCONS_00008733 lncRNA upstream 513137 1913767 ~ 1914730 (-) True XLOC_003816
TCONS_00007333 mRNA downstream 3832 1337620 ~ 1392468 (-) True XLOC_003809
TCONS_00007332 mRNA downstream 105288 1148701 ~ 1291012 (-) True XLOC_003808
TCONS_00007331 mRNA downstream 264731 1094844 ~ 1131569 (-) True XLOC_003807
TCONS_00007327 mRNA downstream 371817 997100 ~ 1024483 (-) False XLOC_003805
TCONS_00007325 mRNA downstream 504626 878660 ~ 891674 (-) True XLOC_003802
TCONS_00007338 mRNA upstream 3111 1403741 ~ 1409236 (-) True XLOC_003811
TCONS_00007339 mRNA upstream 22107 1422737 ~ 1509773 (-) False XLOC_003812
TCONS_00007341 mRNA upstream 146596 1547226 ~ 1550709 (-) True XLOC_003813
TCONS_00007342 mRNA upstream 525174 1925804 ~ 1935883 (-) False XLOC_003818
TCONS_00007343 mRNA upstream 526074 1926704 ~ 1933793 (-) True XLOC_003818
TCONS_00007330 other downstream 307785 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 416552 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 936370 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 1044599 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 2553093 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 4671330 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 4796646 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 5380078 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 5543670 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU279104 True 653 lncRNA 0.42 4 CI01000057 5823728 ~ 5827840 (+)
eurasian perch (Perca fluviatilis) TU260368 True 766 TUCP 0.41 4 NC_053130.1 2888232 ~ 2957840 (-)
mexican tetra (Astyanax mexicanus) TU279104 True 1735 lncRNA 0.51 15 NC_035920.1 16500874 ~ 16521842 (+)
mexican tetra (Astyanax mexicanus) TU260368 True 2473 lncRNA 0.38 5 NC_035918.1 21999187 ~ 22004407 (+)