RNA id: TCONS_00007325


Basic Information

Item Value
RNA id TCONS_00007325
length 1451
RNA type mRNA
GC content 0.48
exon number 9
gene id XLOC_003802
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 815925 ~ 891674 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCTGGTTCACTGTCGTTACACCTCAAACATCAGCTGATTCGCCTTCAGAGGGTTAAAATGAAAAGGAACAGCGTTTATAGGTTTTTATCAGTCTTCTCGTGTCTGCTTGTGTGCGTTTTCCTGTTCTTTTGGGGTTTTGCCTTTTATTCGATGGTTTTGGCACCATAGGACTCTTAATGGACTCCTTCAGAAACAACATACGATATTTCGACACACACTTAAACAACTGAACGACTAATTAATGTGATTTAATAATATTTGCGCATCGTTTATGATCGCGTTTATAATTAAACACCATAGTAAACGCGCGCGTGTGTGCTAACACTGCTAACAGCATTTGTAAAGATGTCAACACGTTGAACGTACAGCATTTCCAATTCGAACATTAGCAAAAACTGCACCACGTCTTTAATTCTGTAGCTTATTCgcttatttaattaattcttaaATCATTTGTGAAACGATAGCTCCGTTCTATTCCAAAACAAACCGACTGCGCATGCGTGCAGCATGACTGTGGTCACATGACGCCAACAAGGAAGTGTTTGACTGTGTGTGAGGACTCCTAACATCATCTCGATGGCGGAATCCAGTCTGAAGCTTCAGTTCGCCCCGTTCTGCAGTGCTCTGGAGGCCGGATTCTGGCATCAGCTCACACAGAAGAAACTCAACGAGTACCGCTTAGACGAAAGTCCAAAAAACATCAAGGGATATTACTATAACGGTGATGCTGTTGGTCTGCCGGCGCGCTTGACACTGGAGTTCAGCGCATTTGATGCGGATGGACCCACGCCGGCGCGCTGCTGTCCCGCATCAGGAACTCTgtacaacacaaacacactcgaAGCCTTCAAATCCACCGACAAAAAAGCCCTGCTGGACAAAGCAGCCAATGAGATCTGGAGCGCTATTCAGTCCGGCGCTGCTCTCGAAGACTCTTCAATCCTCAACAAGTTCATCCTCTTGACATTTGCGGATCTGAAGAAATATCACTTCTATTATTGGTTCTGCTTTCCTGCGCTCTGCTTTGTGGAGGGCATCCAGCTGCTGCGCGCGCCGCTGTCATTAGAGCAGCATTTCTCTGACAAACAGATATCGAGTTTGCAATCGGCGTATGATAATCTCTGTGCCTCCAGCGGAACGACGGCAGTCCCGCATTTTCTGCTGAAATACTCTGAGGAAAGTGTTGAAGTGGCTCCTCTGAAAGAGCTGAACTCCTTCTTCCCGGACCTAAAGAGGgtggcTGTGGGTGTGTACGACCCATGCACGCTACCTCAGCATCCCGGATGGCCTCTCAGAAACCTCCTCGTCCTCCTCGCTAAAAAGTGGGCTTCACAGCTGGATGTTGTGGAGGTTCTGTGCTTCAGAGACCGGACTCTCCAAGGCGTTCGCTCCGTCCAGCACAGCATCATCTTTCAGCTCAGACTCTCAGACCCGGCGCCTTCTGCAG

Function

GO:

id name namespace
GO:0042407 cristae formation biological_process
GO:0007006 mitochondrial membrane organization biological_process
GO:0099041 vesicle tethering to Golgi biological_process
GO:0031300 intrinsic component of organelle membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-1633 Predicted to enable ubiquitin-like modifier activating enzyme activity. Acts upstream of or within autophagosome assembly; heart development; and mitophagy. Predicted to be located in cytoplasm. Is expressed in brain; liver; male organism; and muscle. Orthologous to human ATG7 (autophagy related 7).

Ensembl:

ensembl_id ENSDART00000172904

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008727 lncRNA downstream 34834 815925 ~ 843826 (-) False XLOC_003802
TCONS_00008726 lncRNA downstream 55213 815925 ~ 823447 (-) False XLOC_003802
TCONS_00007317 lncRNA downstream 277352 599758 ~ 601308 (-) True XLOC_003799
TCONS_00007316 lncRNA downstream 277357 599440 ~ 601303 (-) False XLOC_003799
TCONS_00007314 lncRNA downstream 308239 566223 ~ 570421 (-) True XLOC_003796
TCONS_00008728 lncRNA upstream 39819 931493 ~ 985740 (-) True XLOC_003804
TCONS_00007328 lncRNA upstream 123288 1014962 ~ 1018545 (-) True XLOC_003805
TCONS_00008729 lncRNA upstream 173487 1065161 ~ 1088627 (-) False XLOC_003806
TCONS_00007329 lncRNA upstream 173487 1065161 ~ 1088627 (-) False XLOC_003806
TCONS_00008440 lncRNA upstream 177733 1069407 ~ 1088629 (-) True XLOC_003806
TCONS_00007324 mRNA downstream 3279 872833 ~ 875381 (-) False XLOC_003802
TCONS_00007323 mRNA downstream 14828 849794 ~ 863832 (-) False XLOC_003802
TCONS_00007321 mRNA downstream 34849 816106 ~ 843811 (-) False XLOC_003802
TCONS_00007320 mRNA downstream 115939 675296 ~ 762721 (-) True XLOC_003801
TCONS_00007319 mRNA downstream 209102 638212 ~ 669558 (-) True XLOC_003800
TCONS_00007327 mRNA upstream 105426 997100 ~ 1024483 (-) False XLOC_003805
TCONS_00007331 mRNA upstream 203170 1094844 ~ 1131569 (-) True XLOC_003807
TCONS_00007332 mRNA upstream 257027 1148701 ~ 1291012 (-) True XLOC_003808
TCONS_00007333 mRNA upstream 445946 1337620 ~ 1392468 (-) True XLOC_003809
TCONS_00007334 mRNA upstream 504496 1396170 ~ 1400610 (-) False XLOC_003810
TCONS_00007304 other downstream 418730 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 526959 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007326 other upstream 32121 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007330 other upstream 177732 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007400 other upstream 3062049 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 5180286 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 5305602 6197276 ~ 6206589 (-) False XLOC_003884

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_05357955_05399136.mRNA True 3444 mRNA 0.46 18 CI01000057 5356907 ~ 5399252 (+)