RNA id: TCONS_00008731


Basic Information

Item Value
RNA id TCONS_00008731
length 676
lncRNA type read_through
GC content 0.43
exon number 3
gene id XLOC_003815
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1854431 ~ 1867925 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cagattttgtgtgatttggatgtttagaaattgttgtttaattctaatggtgattcctaatatgtcatgtaatcgtaagcttggcaagcaattttagaGAAtctgatgtttccccattcagacagaatgcccgagcatactgcccgagaggcgtttcaaagatggccgccgtgTGAAAAGACTTACCTTAAAGGATCCAGTGTGAAGTCTGCGTCCAGCAGTTCTCCAACATCATCGTCCTGCTCTCCTTCATATATTTTATAGGCCGGGTTCCCGATCTCCACATTCATGGCGCCGTTGGTCATCCTCTGATGCTGGAAGCCTTTGGCTCTGCAGACACACAATACAGAGTTTACTGCACAGTAAATGCTGCGCTCAGATCATTCAAACATGAACTTACGTCCACTGGATTCAGCGTTTTCATTCCGTGCGGGATTCTCACAGCGATGACCTTCCCAACCAAGAGGACACCTACAGGAGGCAGAGAGGGATTTACATTCACATGCATTTAGAAGTGCTTGATGTGCAGCAAACATTAGCAAAGTAGCTTAGAACATACAGCACTTCAATACAAACACAACAAGATCAagcttttattacatttaaatccaGTGCTGTTACTATTAAACCCTCACTATAGCCATTTGCATTCACTTATTAAAGGGGTTGTGAATTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008730 lncRNA downstream 249144 1603728 ~ 1605287 (-) True XLOC_003814
TCONS_00007340 lncRNA downstream 418559 1423111 ~ 1435872 (-) True XLOC_003812
TCONS_00007336 lncRNA downstream 453797 1396300 ~ 1400634 (-) False XLOC_003810
TCONS_00008440 lncRNA downstream 765802 1069407 ~ 1088629 (-) True XLOC_003806
TCONS_00008729 lncRNA downstream 765804 1065161 ~ 1088627 (-) False XLOC_003806
TCONS_00008732 lncRNA upstream 43626 1911551 ~ 1915454 (-) False XLOC_003816
TCONS_00008733 lncRNA upstream 45842 1913767 ~ 1914730 (-) True XLOC_003816
TCONS_00008734 lncRNA upstream 48038 1915963 ~ 1920521 (-) True XLOC_003817
TCONS_00008441 lncRNA upstream 343140 2211065 ~ 2220263 (-) False XLOC_003821
TCONS_00008735 lncRNA upstream 447571 2315496 ~ 2316213 (-) True XLOC_003825
TCONS_00007341 mRNA downstream 303722 1547226 ~ 1550709 (-) True XLOC_003813
TCONS_00007339 mRNA downstream 344658 1422737 ~ 1509773 (-) False XLOC_003812
TCONS_00007338 mRNA downstream 445195 1403741 ~ 1409236 (-) True XLOC_003811
TCONS_00007335 mRNA downstream 453801 1396300 ~ 1400630 (-) False XLOC_003810
TCONS_00007342 mRNA upstream 57879 1925804 ~ 1935883 (-) False XLOC_003818
TCONS_00007343 mRNA upstream 58779 1926704 ~ 1933793 (-) True XLOC_003818
TCONS_00007344 mRNA upstream 76804 1944729 ~ 1967438 (-) False XLOC_003819
TCONS_00007345 mRNA upstream 77130 1945055 ~ 1956204 (-) False XLOC_003819
TCONS_00007346 mRNA upstream 77133 1945058 ~ 1948784 (-) True XLOC_003819
TCONS_00007330 other downstream 765916 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 874683 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 1394501 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 1502730 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 2085798 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 4204035 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 4329351 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 4912783 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 5076375 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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