RNA id: TCONS_00008735


Basic Information

Item Value
RNA id TCONS_00008735
length 514
lncRNA type inter_gene
GC content 0.32
exon number 2
gene id XLOC_003825
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2315496 ~ 2316213 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatcgcttcaaaagcaacagatttacttacttttttcaAGTAAAGCAAACTAATTGCTTCGTACAGTGTatcttttaaatatcttttaaagtGTGGAGCCACTTGAGGTAAAGTACATTTTAGAGTTCTTTtggggtgaactagccctttaaaaagcattaaagtgaCTTAGCAAATCTTGCTTATCTTAAAAGTAAGTTACAAACACGATTATTCTagtataaaatgtcatttaaaattaaaccgtgtattgtgaaatattaatcgTGTCATTTTTTAACAGCTTGTACTTATTAACAACTCTGGAGCTctgcctttttttctgatttcACTCAATCTGTGTGATAATTCACTTGATGATGGCCATTTGTTGTGTCTTTAGATTATCTCTGAGTCATCAAGAATAAAAGATTCTCCTGAAAAAGACAATCGGCACACTTAGTTCAGCCTTCATTGCTGTGTTTGTTTCTGAAGTACACTGAAATAAAGTGATTCATTGggtttatgaattttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008441 lncRNA downstream 95233 2211065 ~ 2220263 (-) False XLOC_003821
TCONS_00008734 lncRNA downstream 394975 1915963 ~ 1920521 (-) True XLOC_003817
TCONS_00008732 lncRNA downstream 400042 1911551 ~ 1915454 (-) False XLOC_003816
TCONS_00008733 lncRNA downstream 400766 1913767 ~ 1914730 (-) True XLOC_003816
TCONS_00008731 lncRNA downstream 447571 1854431 ~ 1867925 (-) True XLOC_003815
TCONS_00008442 lncRNA upstream 130428 2446641 ~ 2448514 (-) True XLOC_003826
TCONS_00007363 lncRNA upstream 308819 2625032 ~ 2628137 (-) True XLOC_003833
TCONS_00008736 lncRNA upstream 440680 2756893 ~ 2760366 (-) True XLOC_003835
TCONS_00008443 lncRNA upstream 525885 2842098 ~ 2843883 (-) True XLOC_003837
TCONS_00008737 lncRNA upstream 660390 2976603 ~ 2982381 (-) False XLOC_003838
TCONS_00007351 mRNA downstream 17664 2252983 ~ 2297832 (-) False XLOC_003823
TCONS_00007353 mRNA downstream 38415 2276354 ~ 2277081 (-) True XLOC_003824
TCONS_00007352 mRNA downstream 45427 2263461 ~ 2270069 (-) True XLOC_003823
TCONS_00007350 mRNA downstream 64729 2240075 ~ 2250767 (-) True XLOC_003822
TCONS_00007348 mRNA downstream 93056 2217413 ~ 2222440 (-) False XLOC_003821
TCONS_00007354 mRNA upstream 132568 2448781 ~ 2456656 (-) False XLOC_003827
TCONS_00007355 mRNA upstream 132568 2448781 ~ 2456786 (-) True XLOC_003827
TCONS_00007356 mRNA upstream 148330 2464543 ~ 2469529 (-) True XLOC_003828
TCONS_00007357 mRNA upstream 155169 2471382 ~ 2478374 (-) True XLOC_003829
TCONS_00007358 mRNA upstream 164080 2480293 ~ 2504750 (-) True XLOC_003830
TCONS_00007330 other downstream 1226981 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 1335748 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 1855566 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 1963795 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 1637510 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 3755747 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 3881063 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 4464495 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 4628087 6944300 ~ 6948018 (-) False XLOC_003898

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU265477 True 259 lncRNA 0.41 1 NW_025047901.1 194282 ~ 194540 (+)