RNA id: TCONS_00007363


Basic Information

Item Value
RNA id TCONS_00007363
length 547
lncRNA type retained_intron
GC content 0.48
exon number 3
gene id XLOC_003833
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2616816 ~ 2632747 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGATGTCTCCTGAACGTGGCTGAAAAAGCCGCCAATGTGGCCCGGGTCTGTCGGCAGGAGGCCCCGCTGTTTGAGCTCCTCGTACAGGAAAAGACCGGAGCAGACAAAAACAAGAAATTCGTCCAGGACTTTAAGACGCTTGCTGATGTGGTGATCCAGGAAATGATTCGCCATGATGTTTGTGCTCAGTTTCCAGAGCTGACTGGCTTTATTCAGGGAGAGGAATCCAACAAGTTTGAAAATGGACTTGgGGAGAGTGTTACTGTGACTGTATGCGCTCAGCAAGAAGACACGACTGCTCTGCTGGCTAAAGTTCTGGATGGAGATCAGACCGCTGCGTCTCTCCTGTCTGAAGTGATCCACCAGGACCTCCAGCTTCAAGATCAGACAGCGGAATCCCTGCAGATCTCCATCAGCCCTGCCGACGTGGGCATCTGGATTGATCCCATCGGTATAGAGCTTGTTGTTTTGAATCGACCTTTTAACTTGCTGACTAATTTCCTTCAAACCATGAATAATATATAGATGAATAATAATTGTTCACTT

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0046855 inositol phosphate dephosphorylation biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-141219-3 Predicted to act upstream of or within inositol phosphate dephosphorylation and phosphatidylinositol phosphate biosynthetic process. Orthologous to human INPP1 (inositol polyphosphate-1-phosphatase).

Ensembl:

ensembl_id ENSDART00000168203

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008442 lncRNA downstream 176518 2446641 ~ 2448514 (-) True XLOC_003826
TCONS_00008735 lncRNA downstream 308819 2315496 ~ 2316213 (-) True XLOC_003825
TCONS_00008441 lncRNA downstream 404769 2211065 ~ 2220263 (-) False XLOC_003821
TCONS_00008734 lncRNA downstream 704511 1915963 ~ 1920521 (-) True XLOC_003817
TCONS_00008732 lncRNA downstream 709578 1911551 ~ 1915454 (-) False XLOC_003816
TCONS_00008736 lncRNA upstream 128756 2756893 ~ 2760366 (-) True XLOC_003835
TCONS_00008443 lncRNA upstream 213961 2842098 ~ 2843883 (-) True XLOC_003837
TCONS_00008737 lncRNA upstream 348466 2976603 ~ 2982381 (-) False XLOC_003838
TCONS_00008738 lncRNA upstream 348466 2976603 ~ 2982382 (-) True XLOC_003838
TCONS_00007368 lncRNA upstream 676414 3304551 ~ 3308462 (-) True XLOC_003839
TCONS_00007361 mRNA downstream 30987 2571486 ~ 2594045 (-) True XLOC_003832
TCONS_00007360 mRNA downstream 75892 2540139 ~ 2549140 (-) False XLOC_003831
TCONS_00007359 mRNA downstream 75892 2540139 ~ 2549140 (-) True XLOC_003831
TCONS_00007358 mRNA downstream 120282 2480293 ~ 2504750 (-) True XLOC_003830
TCONS_00007357 mRNA downstream 146658 2471382 ~ 2478374 (-) True XLOC_003829
TCONS_00007364 mRNA upstream 63106 2691243 ~ 2700397 (-) True XLOC_003834
TCONS_00007365 mRNA upstream 201675 2829812 ~ 2838699 (-) False XLOC_003836
TCONS_00007366 mRNA upstream 204614 2832751 ~ 2837156 (-) True XLOC_003836
TCONS_00007367 mRNA upstream 673140 3301277 ~ 3308569 (-) False XLOC_003839
TCONS_00007369 mRNA upstream 692461 3320598 ~ 3334248 (-) False XLOC_003840
TCONS_00007330 other downstream 1536517 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 1645284 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 2165102 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 2273331 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 1325586 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 3443823 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 3569139 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 4152571 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 4316163 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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