RNA id: TCONS_00007359


Basic Information

Item Value
RNA id TCONS_00007359
length 3798
RNA type mRNA
GC content 0.37
exon number 6
gene id XLOC_003831
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2540139 ~ 2549140 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGCAGTAAAGCAATACACAGCAGCCAACAGTAGTGAAGAAGAGCAAGAAAAGCTTGTGGCAGATCCCAGATCAGCAGTCAGCCCGGTGTGCACGTCATCAGTTCACCAGCGCGTGTGTGTGCGGCGAATTTAAAGCAAaagGTGGTTATGGAAAAGCAGTATCATATTATTATCTTCTGTGCACTTTTGTCTGTGCACCTATCATTTGTCCAAGGCGCCAGACAGGGTCAAGACGTCAAATGTGGAGCATGCAGGGCGTTAGTTGATGAAATGGAGTGGGAAATATCGCAAATCGATCCCAAGAAAACAATCCAGACTGGATCATTTAGGATCAATCCTGATGGCAGTCAGTCAGTACGAGAGGTCCCATACTCTCGCTCAGAGGGTCATCTACTCGAGTTGATGGAAGAGGTTTGTGAGAAGATGAATGATTACGGTGAACGCGTCGATCCTGTTACTGATCGGAAGACATACGTGAGACACACGTCCCGGGACGGCACGGCAATGGACCTCTCTGATGTGGCGTTTGACTCCAGAGTCAGCTCCAGCTTAAAGTTTGCTTGTGAAACAATCGTGGAGCAGCATGAGGATGAACTTATTGAATTCTTTGCTCATGAGACGGACAATGTAAAAGACAAGCTCTGCAGTAAGAGGACAgATCTCTGTGACCACGCGCTGAACATCCATCATGATGAGCTCTAACACGAGTCTGCAGCTTCACCTATGGAGAATAATGTGTGAGGAAGCTGAGCCTATGTAATGTACTGGACCCCATGGGTTACTGTTGACCTGTTCAGCTGTATCAATGGCTTCTCCATCACAACTGTTCATCGTCATCAATTAAAGCTGACTTTCTACAGCTGAAGCGAGATCTCTTCTCGAGTCTCTCCAATGGCGtacttttgtatttaaaacacatttgagTGCACTTAGTGTTTAGTTTAGAAAACGTCTTGCAGGATATTTATTAAAAGCGCAGAGTTCTTATTAGTTTGTCTTTGTATTTGAATCTGACCAGATTACTAGTCTTAAAGGGCtcgttcacacaaaaatgaaaattctgtcatcatctatTGATGTTTGAGATGGTTTCTTCTGTctaacaaaaaaagaagatattttgaaaaatgataaccattaaaggggacctgttatacaaaagtcacttttataaggggtttcaAAACAGTTGTGCAGCAAAAATATGTGAATGTAACTAGcttttaatggtttattataGAAAtggtctgcagaaacactttgattgacattctccctttgtactaaaggggaaagccccacccactagtgaccatctctccctcattagcttaggataggggtgtccaaactcggttctggaaggccggtgtcctgcagattttatctccaaccccAATAAGACAAACCTGGGCTaggtaatcaagctcttactaggctttctagaaacatccttgcaggcgtgttgaggcaagttggagctgaaatgtgcaggacaccgaccctccaggaccgagtttggacacccctggcataggaagttagtcttgtttttgaatctgccactatgctgacaggcatctgtagctccgccctcttctgaaaagagctcaatctcatttgaatttaaagcgacggTCACCTAAAcgccacaatttggatcaaagcctaaaaggggcagattcgagttgtaaaacattattagtgtggtattttgagctgaaacttttcaCACACACTCTAAACTGTCCTTTAAACCATGCACCAAAACAATTGAGAACGGTATAAACGGAGGTTGGAGCCAACTCCAAGTGGATGGGCCTTCGAGCTctaagtgggctgtacaaacctggagtttttatttatttaatgtcttgtacgTGACATTGAGTCCAATATTGTACTTTATGAATGTCTtccccaacctcacagtaacctgatgtgttttattaatgtttactccacctacaccacctaaacccaacctacttgtgacgaaggtccctcccacttggaggtcccCCAACCTATTTGTggtgtaatccctcccacttggaggtctccgggctgcagcgatacctacttTGAAACAGTTGTCCACCATTGTATTTGTTTGTCCTGCAGCGGATATCAATGgtattcaacattcttcaaaatatcttcttttgtgtttcaaTATAAGAATGAAGCTCTTAAACATTTTGAGCTATTTAAGGGCAAATAAATTATGAGTATTTTTGTATTCATGGGTAAACTATCATCTTTGTCTCTTGtttttccctgctctgttaaatataatttgggaaatatttaaaaaagaaaaacaaactcaaagtggggctaataattctgacttcaactgtatatatacaatttttttttcgtgTTTTCACAAGCAAAAGCAATGGGAATGTCTGCATTTTTAGAGGGTTTTTTCCATCGCAGTTGTGAATTAGTAAAGTCTGATggcatttttatacattaaagcaCTTACTGTCAGATGCCAAACTTGAGTATTAGCAAAGCCACAAAGAACATTTAATAAAGTCTTCTTTCTTGCATACAGTTATTTGCATAcaggtattttatttttacaaaagttATTTGATACGTTAAAGTTCATCCATTTTGCTTGCATTTAGTATGATTTCTGTGACTAAATGACTTTTTACtgctaatgtaaagaaaacatccaaaatgcGTCTTATCAACAATTACAACTAcacatttatatactgtattatatctCAGAATATTGTTTTGTGCTGCAGGTTGGTAATTGATTAATGTGGTCCAAGTTTacatgtttacaaaaaaataaataaatagatttttagacattttaattTCTAGAGAGGACATTTCTGTAGAACTTATTTGATTATTGTGATCTAAGTTTAAATGTTaggaaaaaaaatagatttttagacATTTTGATGCCTGAAGAGGACATTTCTGTAGAATTTACCTGATTAATGTGGTCTGAGTTGAAATGTTagaaaaataaagacattttttttagaCATTTGCTATACCAAAAGATGGCTTTTCTGTTGACGATAATTTATTAACGTACCTAACTCAATGTTTACACAAGAGGACATTTTTGTTGAAGGTAATTCATGAATGTGGTCTTGGTTTACATCGTAAGCGGGTTTAAAAGTTGTAAAAATAAAAGGGTTTTTAGGTTTTTTGCTATACCAAAGGAAAACATTTCTGTTGAAGACAATTGTTGTTTAAGTTTTAAtgtttgcaacaacaacaaaaaaggtaCGGTAATTGATTAAAGTGGTGTAAGTTTCAATCACAGGTTTAAATGATAGAAAAAAATGATAGGCTAGCTTTTTAGACATTTTtctataccaaaaaaaaaagcctttctgTTGAAGATAATTGAATAATGTGGTCTATAagtttaaatgtttacaaaacaaatacatttttagaccTTTTTGCTATAGCAAAATAAGACGTTTCTGTTGAAGATAATTAATTAATGCGATGTTAGTTTATACTATAGACAGGTTTAAATGATAGAAAAATAGAGTTTAAACAAATATCTTTTGTTTTAGTATATCTCTTAGTATATTAAGTGTACTgtcatttatattttagtttatccTACTTATTTTCACTATCATTGATGCTGTTGgcactattattatattattattatttaataacctCCATTTATTTGGTTATTACATGTATTTCTAATGCTCACTGTTATATGCTGATTGTCATATTTTTTGTGTTCacataatttcaaaataaaagaataaagatttaatgaaaag

Function

GO:

id name namespace
GO:0005783 endoplasmic reticulum cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060315-4 Predicted to be active in endoplasmic reticulum. Orthologous to human CNPY2 (canopy FGF signaling regulator 2).

Ensembl:

ensembl_id ENSDART00000056065

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008442 lncRNA downstream 91625 2446641 ~ 2448514 (-) True XLOC_003826
TCONS_00008735 lncRNA downstream 223926 2315496 ~ 2316213 (-) True XLOC_003825
TCONS_00008441 lncRNA downstream 319876 2211065 ~ 2220263 (-) False XLOC_003821
TCONS_00008734 lncRNA downstream 619618 1915963 ~ 1920521 (-) True XLOC_003817
TCONS_00008733 lncRNA downstream 625409 1913767 ~ 1914730 (-) True XLOC_003816
TCONS_00007363 lncRNA upstream 75892 2625032 ~ 2628137 (-) True XLOC_003833
TCONS_00008736 lncRNA upstream 207753 2756893 ~ 2760366 (-) True XLOC_003835
TCONS_00008443 lncRNA upstream 292958 2842098 ~ 2843883 (-) True XLOC_003837
TCONS_00008737 lncRNA upstream 427463 2976603 ~ 2982381 (-) False XLOC_003838
TCONS_00008738 lncRNA upstream 427463 2976603 ~ 2982382 (-) True XLOC_003838
TCONS_00007358 mRNA downstream 35389 2480293 ~ 2504750 (-) True XLOC_003830
TCONS_00007357 mRNA downstream 61765 2471382 ~ 2478374 (-) True XLOC_003829
TCONS_00007356 mRNA downstream 70610 2464543 ~ 2469529 (-) True XLOC_003828
TCONS_00007355 mRNA downstream 83353 2448781 ~ 2456786 (-) True XLOC_003827
TCONS_00007354 mRNA downstream 83483 2448781 ~ 2456656 (-) False XLOC_003827
TCONS_00007361 mRNA upstream 22346 2571486 ~ 2594045 (-) True XLOC_003832
TCONS_00007362 mRNA upstream 67676 2616816 ~ 2632747 (-) False XLOC_003833
TCONS_00007364 mRNA upstream 142103 2691243 ~ 2700397 (-) True XLOC_003834
TCONS_00007365 mRNA upstream 280672 2829812 ~ 2838699 (-) False XLOC_003836
TCONS_00007366 mRNA upstream 283611 2832751 ~ 2837156 (-) True XLOC_003836
TCONS_00007330 other downstream 1451624 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 1560391 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 2080209 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 2188438 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 1404583 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 3522820 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 3648136 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 4231568 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 4395160 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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