RNA id: TCONS_00007362


Basic Information

Item Value
RNA id TCONS_00007362
length 3844
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_003833
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2616816 ~ 2632747 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCTAAACATCTGCGCTAAATGTGCTGTCGTCACAGGGCAGAAATGATGTGTGTTCACCGACTGAGGATCAGAACCGGACTGTGACTCGTGGAAAACGGTCAGATTGAGCTCAAGGACACCGCTGCACATTCACGgctGCAGGTATGGCAGATTTGCTGCGATGTCTCCTGAACGTGGCTGAAAAAGCCGCCAATGTGGCCCGGGTCTGTCGGCAGGAGGCCCCGCTGTTTGAGCTCCTCGTACAGGAAAAGACCGGAGCAGACAAAAACAAGAAATTCGTCCAGGACTTTAAGACGCTTGCTGATGTGGTGATCCAGGAAATGATTCGCCATGATGTTTGTGCTCAGTTTCCAGAGCTGACTGGCTTTATTCAGGGAGAGGAATCCAACAAGTTTGAAAATGGACTTGgGGAGAGTGTTACTGTGACTGTATGCGCTCAGCAAGAAGACACGACTGCTCTGCTGGCTAAAGTTCTGGATGGAGATCAGACCGCTGCGTCTCTCCTGTCTGAAGTGATCCACCAGGACCTCCAGCTTCAAGATCAGACAGCGGAATCCCTGCAGATCTCCATCAGCCCTGCCGACGTGGGCATCTGGATTGATCCCATCGATGGGACAAGCCAGTACATTGAAGGAAAAGAGGAAGAGGAGCCAGATGAAGGGTTTTGCGTGTCCGGACTGCCCTGCGCTTTGGTTCTGGTTGGAGTTTACTTGCGAGCCACTGGTCAGCCAGTTATGGGTGTCATAAACCAGCCATTCAACCGCAAAGACTCCACAGGGAAACGATGGAAAGGCCAGTACGTGTGGGGTGTTTCGTATGAAGATGTGAACGTATGTTCGCTCACACAACGCAGACAGTCACTGGCACAGAAGAGCGAACACCTATCCGTATTATTGAGCTCCAGTGAGCGGCGCGAGGTGAAGGACGCGCTCGCGGCGCTCTCCAACGGCTCGCTAATGTTCGCATCCGGCGCCGGATACAAAATCCTGTGTGTTTTGCAGGGTCTAGCAGATGTGTATGTGTTATCTGAGGGAAGCACCTTTAAATGGGACTCGTGCGCTCCTCATGCCATTCTGCGGGCTCTGGGTGGTGGAGTTTCTGATTTGAGCGCATGTATGCAGGCTAAAAACACTGGGTACGCCACTGAAATCACATACCATCAGCCCTCAGGGGACCATCAGAGTCACGGTGTGGATCGGTGGGCCAATCAGGGGGGAATAATCGCATATCTGGACTCCAGCATCATTGAGAAAGTCATAGCGGTGCTTGCTGGAAAGATCTGACTAATATATGAAGTGCTTATCCATGTTTGGAACTAAACAATCACACAGTAGGGTTTTATTAGTGAAGTAAGAGATAAactacatccaggaggttgttacaAGGGTTTATTCTGTGAGAACAACCGTCTGGATGTACTTTATGTTGCTTGATACattgatataaaatatacaaaccacacacaaaacattgttcaaagctgtaatagtttattaGTTCTTTAATTCAATGCAAAACTGACTGAATtgtaaacagctgatggagtatacactaacctgtgcatcaTTCAGCCACAGGATGGCGCCAAACTGCAAAGCTGACAAACACGAAGCCATTTAAATGAAGTTTACTATACAATCACTGTATTTGTGATCATGTATCCATGGTTAGTAGAAGGGATTTCATTTCATATACATTATAAGTTGTAATTATTCCAAACTCATGATGGATAGTATGTTTAGTTTTATGCTATATTTGATCTTCTTTATGatgatagttttattttatgatttatcaGCATATTCAAGTTTTAAATTAAGGCTATAGCGTATTAGAACAAAATCATAATGCTTATCTGCAATGTTTAGTTgggtaaataagtattgaacacgtcaccatttttcccagaaaacacatttctaaaggtgccgttggcTTGAAATTTTCCTAGATgctggtaacaaccaaagaaatccatatatgcaaagaaaacaaatctaattagtttacaaatgaagttatgcgtaataaaatgaaatgacgcaggggaaaaagtgttgaacacatgaagaaaggaaggtgtgattcggcagtgaaagcccagacagcagctgaaatctctcagtggtTCTTCAGCAAGcgtctgcccttcctcagtgtaaatgaacatcagctgcttcatcaacatctacatcagcaggaggatgaagatgaaaccagagtggacatttcagcaagacaatgatccaaaacacagccaagagactctcaaatgctttcagagaaagaaaatcaagctgtagaatggcccagccaatcacctgagctgAATCCTATAGAGAATACAGaagaaagctcagatttgatagacgagacccacagaagcatcaagatttatacactctgttgaagtctgtgagaaactcacacctgagcaatgcatgtggcTTCATTCTCCACATCAGAGGCGTCTTTAGGTTGCCATCAATGAATTtgatataaagtattaaacacatttcagtagttcagcactgcTTTCTCCTGTCATTTCATTCTTATTACACACaactcttttgtttttgttcagttttagttttatgtttgtattatttgggTTTTACTAAAATCTGCTTCAATTtaatgtcaacagctccttcagaaatattattcccaggataAAACCTgacagcccctttcacacagtgataccggtaaatattcgGAAAATTTActgaacgactttaccggtatattcaaaaaagcgctgttcacacaggcgaggacgttacggaatttttccggaaaagagcattcacacatccattccaaaatagcggtaaattctgacatcattcaccacaaatgagctttaaacggctgcgcttgtatttgtaaacatttgactaaattacaaactcttttgatgaccAGTATTGTAAACAACGttcacaggatcatattcgcatgtcgagatgttcataatatgtgcgtgtgcaggcgctcacaggctgtttcatgggcacacgcaaagcttgaaggtaaacaaacaacggcttatcataagcatcttatcgatgattatttacacagttggcattaagaagaacatataaacgtgatctgactaacttctagcagctaaatgtgtctggaaaaatattcaaaggcttttattctcacaaaccgcgcggacgtaaatgcgtctgactgttgtgattggctaaagcagaagtcttacgtcagcacgttctagacgtgaacgcgcttattccggaaatctttCTTCTGCGTTCAcgcagcgcagcattccggcaaattgccggtaatgttacaacttctctttccggaaaatagccagaacgaatttaccggtattttcaaaaaggacctgttcacacatacaacctttccggaaaattaccggcaattttccggaaaggtctgtatgtgtgaaaggggcttatatgtttttaattagtttgattTTGTGTCATCCTCGTGATGTGAATGTCCTGATGAAGTGAAGTGTTACTGAAGGAAAGCAggattatcacacacacacacacacacacacacacacacacatgaagatTCATGGCCTTTTATggtgttttgtaatatttgacaGTAAGAAGTGAGTCCTGAGAGTGAAAACAGCGGAAACACATCTGACCTGCTGCAGGTTTCACCTCTTATTCTGAAGTGTTGGTGGGTAATTATGAATCTTGTGTAAAAATAGTACTGTTAAATGTTGGGTAAGAAATGAtagattattaaattaaatataaggcACTGGTCATATTTAAAAGCTGTAATAAAGCCGTTGTGGATTTTTAAATTCT

Function

GO:

id name namespace
GO:0046854 phosphatidylinositol phosphorylation biological_process
GO:0046855 inositol phosphate dephosphorylation biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-141219-3 Predicted to act upstream of or within inositol phosphate dephosphorylation and phosphatidylinositol phosphate biosynthetic process. Orthologous to human INPP1 (inositol polyphosphate-1-phosphatase).

Ensembl:

ensembl_id ENSDART00000008133

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008442 lncRNA downstream 168302 2446641 ~ 2448514 (-) True XLOC_003826
TCONS_00008735 lncRNA downstream 300603 2315496 ~ 2316213 (-) True XLOC_003825
TCONS_00008441 lncRNA downstream 396553 2211065 ~ 2220263 (-) False XLOC_003821
TCONS_00008734 lncRNA downstream 696295 1915963 ~ 1920521 (-) True XLOC_003817
TCONS_00008733 lncRNA downstream 702086 1913767 ~ 1914730 (-) True XLOC_003816
TCONS_00008736 lncRNA upstream 124146 2756893 ~ 2760366 (-) True XLOC_003835
TCONS_00008443 lncRNA upstream 209351 2842098 ~ 2843883 (-) True XLOC_003837
TCONS_00008737 lncRNA upstream 343856 2976603 ~ 2982381 (-) False XLOC_003838
TCONS_00008738 lncRNA upstream 343856 2976603 ~ 2982382 (-) True XLOC_003838
TCONS_00007368 lncRNA upstream 671804 3304551 ~ 3308462 (-) True XLOC_003839
TCONS_00007361 mRNA downstream 22771 2571486 ~ 2594045 (-) True XLOC_003832
TCONS_00007360 mRNA downstream 67676 2540139 ~ 2549140 (-) False XLOC_003831
TCONS_00007359 mRNA downstream 67676 2540139 ~ 2549140 (-) True XLOC_003831
TCONS_00007358 mRNA downstream 112066 2480293 ~ 2504750 (-) True XLOC_003830
TCONS_00007357 mRNA downstream 138442 2471382 ~ 2478374 (-) True XLOC_003829
TCONS_00007364 mRNA upstream 58496 2691243 ~ 2700397 (-) True XLOC_003834
TCONS_00007365 mRNA upstream 197065 2829812 ~ 2838699 (-) False XLOC_003836
TCONS_00007366 mRNA upstream 200004 2832751 ~ 2837156 (-) True XLOC_003836
TCONS_00007367 mRNA upstream 668530 3301277 ~ 3308569 (-) False XLOC_003839
TCONS_00007369 mRNA upstream 687851 3320598 ~ 3334248 (-) False XLOC_003840
TCONS_00007330 other downstream 1528301 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 1637068 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 2156886 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 2265115 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 1320976 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 3439213 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 3564529 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 4147961 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 4311553 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000056_01963536_01972044.mRNA True 1753 mRNA 0.47 5 CI01000056 1963536 ~ 1972600 (+)