Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00007344 |
| length | 2482 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 8 |
| gene id | XLOC_003819 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 1944729 ~ 1967438 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0048384 | retinoic acid receptor signaling pathway | biological_process |
| GO:0009755 | hormone-mediated signaling pathway | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0004879 | nuclear receptor activity | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0003707 | steroid hormone receptor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-080403-6 | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation; hormone-mediated signaling pathway; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated and retinoic acid receptor signaling pathway. Predicted to be located in nucleus. Is expressed in liver and biliary system; nervous system; and pancreatic system. |
| ensembl_id | ENSDART00000155844 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008734 | lncRNA | downstream | 24208 | 1915963 ~ 1920521 (-) | True | XLOC_003817 |
| TCONS_00008732 | lncRNA | downstream | 29275 | 1911551 ~ 1915454 (-) | False | XLOC_003816 |
| TCONS_00008733 | lncRNA | downstream | 29999 | 1913767 ~ 1914730 (-) | True | XLOC_003816 |
| TCONS_00008731 | lncRNA | downstream | 76804 | 1854431 ~ 1867925 (-) | True | XLOC_003815 |
| TCONS_00008730 | lncRNA | downstream | 339442 | 1603728 ~ 1605287 (-) | True | XLOC_003814 |
| TCONS_00008441 | lncRNA | upstream | 243627 | 2211065 ~ 2220263 (-) | False | XLOC_003821 |
| TCONS_00008735 | lncRNA | upstream | 348058 | 2315496 ~ 2316213 (-) | True | XLOC_003825 |
| TCONS_00008442 | lncRNA | upstream | 479203 | 2446641 ~ 2448514 (-) | True | XLOC_003826 |
| TCONS_00007363 | lncRNA | upstream | 657594 | 2625032 ~ 2628137 (-) | True | XLOC_003833 |
| TCONS_00008736 | lncRNA | upstream | 789455 | 2756893 ~ 2760366 (-) | True | XLOC_003835 |
| TCONS_00007342 | mRNA | downstream | 8846 | 1925804 ~ 1935883 (-) | False | XLOC_003818 |
| TCONS_00007343 | mRNA | downstream | 10936 | 1926704 ~ 1933793 (-) | True | XLOC_003818 |
| TCONS_00007341 | mRNA | downstream | 394020 | 1547226 ~ 1550709 (-) | True | XLOC_003813 |
| TCONS_00007339 | mRNA | downstream | 434956 | 1422737 ~ 1509773 (-) | False | XLOC_003812 |
| TCONS_00007338 | mRNA | downstream | 535493 | 1403741 ~ 1409236 (-) | True | XLOC_003811 |
| TCONS_00007347 | mRNA | upstream | 144144 | 2111582 ~ 2131280 (-) | True | XLOC_003820 |
| TCONS_00007348 | mRNA | upstream | 249975 | 2217413 ~ 2222440 (-) | False | XLOC_003821 |
| TCONS_00007349 | mRNA | upstream | 250466 | 2217904 ~ 2221159 (-) | True | XLOC_003821 |
| TCONS_00007350 | mRNA | upstream | 272637 | 2240075 ~ 2250767 (-) | True | XLOC_003822 |
| TCONS_00007351 | mRNA | upstream | 285545 | 2252983 ~ 2297832 (-) | False | XLOC_003823 |
| TCONS_00007330 | other | downstream | 856214 | 1069406 ~ 1088515 (-) | False | XLOC_003806 |
| TCONS_00007326 | other | downstream | 964981 | 923795 ~ 979748 (-) | True | XLOC_003803 |
| TCONS_00007304 | other | downstream | 1484799 | 459815 ~ 459930 (-) | True | XLOC_003793 |
| TCONS_00007296 | other | downstream | 1593028 | 349113 ~ 351701 (-) | True | XLOC_003787 |
| TCONS_00007400 | other | upstream | 1986285 | 3953723 ~ 3953837 (-) | True | XLOC_003853 |
| TCONS_00007438 | other | upstream | 4104522 | 6071960 ~ 6072066 (-) | True | XLOC_003881 |
| TCONS_00007441 | other | upstream | 4229838 | 6197276 ~ 6206589 (-) | False | XLOC_003884 |
| TCONS_00007456 | other | upstream | 4813270 | 6780708 ~ 6782076 (-) | True | XLOC_003894 |
| TCONS_00007463 | other | upstream | 4976862 | 6944300 ~ 6948018 (-) | False | XLOC_003898 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000057_00956994_00965947.mRNA | True | 3208 | mRNA | 0.45 | 8 | CI01000057 | 955633 ~ 965947 (-) |
