RNA id: TCONS_00007343


Basic Information

Item Value
RNA id TCONS_00007343
length 678
RNA type mRNA
GC content 0.46
exon number 10
gene id XLOC_003818
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1925804 ~ 1935883 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgtgtttatgttcGCAGGTGGCTCCAGCAGATCAGGCTGTTGAAGGAAGCAAACCTCCAAGCTACGAGGAGGCAAACGCAGGTTCAGCTTTCTGGCAAATTTacttaattcaACGAATCTTCATACGAAAGGTTTATTCCATTCTGATGCTGCAGCTCTTCTCCACAGTTGCCGTTATTGCTCTCTTCACTTTCCACGCTCCAGTCAGGATGTACATTCAGACTCATCCAATCCTGTACTCCGCCTCCAAtctcCTGTTTCTTATCACATACATTTCATTGGCCTGCTGTGGTGATCTGAGGAGGCAGTTTCCATGGAATCTTATTCTGCTTACAGTCTTTACTCTGAGCATGGCGTGCATGTTGGGTTTTATCTCCAGTTTCTACAACACTAAAGCGGTGGTTCTGTGTATCGGCATCACAGCggtcgtgtgtttgtgtgtgacgcTCTTCAGCTTTCAGAGCAAGATTGACATCACATCTTATCAAGGTCTGCTCTTCATCCTGTGTATGGTGATGTTTTTCTGCGCCATCGTCATGGGCTTTGTGGTTCCCTTCGGCTATGTTCCATGGCTGCACGCGGTCTACTCCAGCATAGGAGCCGTCGTCTTTACAATGGTGAGAAGCAGGGTCAACACTGAAGAGTATTCAATTCAAGTATATTGCTATACACAATAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-120426-3 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human FAIM2 (Fas apoptotic inhibitory molecule 2).

Ensembl:

ensembl_id ENSDART00000186850

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008734 lncRNA downstream 6183 1915963 ~ 1920521 (-) True XLOC_003817
TCONS_00008732 lncRNA downstream 11250 1911551 ~ 1915454 (-) False XLOC_003816
TCONS_00008733 lncRNA downstream 11974 1913767 ~ 1914730 (-) True XLOC_003816
TCONS_00008731 lncRNA downstream 58779 1854431 ~ 1867925 (-) True XLOC_003815
TCONS_00008730 lncRNA downstream 321417 1603728 ~ 1605287 (-) True XLOC_003814
TCONS_00008441 lncRNA upstream 277272 2211065 ~ 2220263 (-) False XLOC_003821
TCONS_00008735 lncRNA upstream 381703 2315496 ~ 2316213 (-) True XLOC_003825
TCONS_00008442 lncRNA upstream 512848 2446641 ~ 2448514 (-) True XLOC_003826
TCONS_00007363 lncRNA upstream 691239 2625032 ~ 2628137 (-) True XLOC_003833
TCONS_00008736 lncRNA upstream 823100 2756893 ~ 2760366 (-) True XLOC_003835
TCONS_00007341 mRNA downstream 375995 1547226 ~ 1550709 (-) True XLOC_003813
TCONS_00007339 mRNA downstream 416931 1422737 ~ 1509773 (-) False XLOC_003812
TCONS_00007338 mRNA downstream 517468 1403741 ~ 1409236 (-) True XLOC_003811
TCONS_00007335 mRNA downstream 526074 1396300 ~ 1400630 (-) False XLOC_003810
TCONS_00007344 mRNA upstream 10936 1944729 ~ 1967438 (-) False XLOC_003819
TCONS_00007345 mRNA upstream 11262 1945055 ~ 1956204 (-) False XLOC_003819
TCONS_00007346 mRNA upstream 11265 1945058 ~ 1948784 (-) True XLOC_003819
TCONS_00007347 mRNA upstream 177789 2111582 ~ 2131280 (-) True XLOC_003820
TCONS_00007348 mRNA upstream 283620 2217413 ~ 2222440 (-) False XLOC_003821
TCONS_00007330 other downstream 838189 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 946956 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 1466774 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 1575003 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 2019930 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 4138167 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 4263483 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 4846915 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 5010507 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000057_00938618_00949690.mRNA True 1290 mRNA 0.46 10 CI01000057 938071 ~ 949779 (-)