RNA id: TCONS_00007349


Basic Information

Item Value
RNA id TCONS_00007349
length 1706
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_003821
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 2211065 ~ 2222440 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atCAAATTTcccatttaatgtattttattaacgtctacccccattccaaccctaaacccaaccgtcacagcactgtgaaaacagtagttgtaccgggtattatttatattatctattaaattacccaataaattgtattttttaagacttaccccaacccttaacccaaccatcacagtactgtaaaaatattaattactgttatatagtgtcattaaaaaatgctgctatattaatgtgcatatcccACTTCCGGCCTTCCCacttaattttgctttgtccaagtaaagctacttaATCGTGCtgacatccatccaatcaccaacaatacacTTCAATAAAACCTATAGACTTTATAGCAAATTCCccattaaattccctaatcagagaaagaaaactaaaaataattgttCTTCATGATAATACTGGGCCGTTAGAAAAAAATCCTCAGTgtttaagtctaaaatttaattcttaATGGTCTAAAAAGGGGTtttaaaggtcttaaattttacttaataaaatctgcagaaaccctcATACAATATAGAGAGCGTGTTACAagctgtcactgttcaaaaatgaacaaatgttaaaaagtttagacattaaaaacagctgattATGTTGCAAATtatctgatatttttttattatcttattcTGTTTTTATGTACAGTCATGAACACACCTATTTGTAGAGCAGGCAGTTTGAGTGTTTTCTGCCCTTCATTATTCCTATAGTCATTTCTCCTTTAGGCAGAAGTTCTGCATTGCAGAATAAGCTCAATAGGCTACTTGCATGCTCGGTGAATAGAATTGCCCCTAGTAGACAAATGAAGTcttaattaaaactaaatcatGCATTCATTAACTTATGCATATTGTTTGATGTGTAGGTTGGAAAGTGGAGATGCATCTAAGAGAGAAGTGCCTGATCTGGCTGTTGAGCGGCTCTTCAACAGCTCCACAGCCGCTTCCCGGTTCTTGCAGGCTGAGCTGGAGCTGAACGCCCGGCTGCAGATGCTGTCCTTTGGAAATCCCGTGCGGTACACGTACAACCCCCTGGAGTACGCCTGGGAGACTCATCAGTGTTATGTGGAGAATTACTGTCAGGAGGGGCAGAGTGTCCTCTTTCTGGGCATGAACCCGGGACCCTTCGGCATGGCACAAACTGGGGTTCCATTCGGGGAAGTGAAAGCGGTTCGCAATTGGCTGAAGATCACGGGAAGGGTGGGGCGTCCGGCAGACGAGCACCCGAAGCGGCGAATCACAGGCCTGGACTGCACTCAGAGTGAAGTGAGCGGCGCTCGGTTCTGGGGCTTTTTCCAGGAGCTCTGCGGAGAACCGAACAACTTCTTCCGCCACTGTTTTGTGCACAACTTGTGTCCTCTGATCTTCATGAGTGAGTCCGGCAAGAACTTGACCCCTCCCGAGCTCCCGGCGGCAGAGCGAGACGCTCTCCTGTCCTGCTGTGACTCTGCCCTCTGTCGGGTCGTCACAGCACTGGGCATCTCCATGGTGATCGGGGTGGGGAAACTGTCAGAGCAGCGTGCCCGACGAGCGCTCTCAGAGGCGGGCATCAGCGTCAGGGTGGAAGGCATCATGCATCCATCCCCTAGAAACCCACTGGCTAATAAAGGCTGGGCGAGTGTAGCCCGAGATAAACTAGATCAGCTGGGGGTTTTGGGTTTGCTGACTAGATGA

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043038 amino acid activation biological_process
GO:0043039 tRNA aminoacylation biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006418 tRNA aminoacylation for protein translation biological_process
GO:0006457 protein folding biological_process
GO:0006518 peptide metabolic process biological_process
GO:0005761 mitochondrial ribosome cellular_component
GO:0000313 organellar ribosome cellular_component
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0000502 proteasome complex cellular_component
GO:0004812 aminoacyl-tRNA ligase activity molecular_function
GO:0016875 ligase activity, forming carbon-oxygen bonds molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-9473 Predicted to enable single-strand selective uracil DNA N-glycosylase activity. Predicted to act upstream of or within base-excision repair. Predicted to be located in nucleus. Orthologous to human SMUG1 (single-strand-selective monofunctional uracil-DNA glycosylase 1).

Ensembl:

ensembl_id ENSDART00000189292

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008734 lncRNA downstream 297383 1915963 ~ 1920521 (-) True XLOC_003817
TCONS_00008732 lncRNA downstream 302450 1911551 ~ 1915454 (-) False XLOC_003816
TCONS_00008733 lncRNA downstream 303174 1913767 ~ 1914730 (-) True XLOC_003816
TCONS_00008731 lncRNA downstream 349979 1854431 ~ 1867925 (-) True XLOC_003815
TCONS_00008730 lncRNA downstream 612617 1603728 ~ 1605287 (-) True XLOC_003814
TCONS_00008735 lncRNA upstream 94337 2315496 ~ 2316213 (-) True XLOC_003825
TCONS_00008442 lncRNA upstream 225482 2446641 ~ 2448514 (-) True XLOC_003826
TCONS_00007363 lncRNA upstream 403873 2625032 ~ 2628137 (-) True XLOC_003833
TCONS_00008736 lncRNA upstream 535734 2756893 ~ 2760366 (-) True XLOC_003835
TCONS_00008443 lncRNA upstream 620939 2842098 ~ 2843883 (-) True XLOC_003837
TCONS_00007347 mRNA downstream 86624 2111582 ~ 2131280 (-) True XLOC_003820
TCONS_00007344 mRNA downstream 250466 1944729 ~ 1967438 (-) False XLOC_003819
TCONS_00007345 mRNA downstream 261700 1945055 ~ 1956204 (-) False XLOC_003819
TCONS_00007346 mRNA downstream 269120 1945058 ~ 1948784 (-) True XLOC_003819
TCONS_00007343 mRNA downstream 284111 1926704 ~ 1933793 (-) True XLOC_003818
TCONS_00007350 mRNA upstream 18916 2240075 ~ 2250767 (-) True XLOC_003822
TCONS_00007351 mRNA upstream 31824 2252983 ~ 2297832 (-) False XLOC_003823
TCONS_00007352 mRNA upstream 42302 2263461 ~ 2270069 (-) True XLOC_003823
TCONS_00007353 mRNA upstream 55195 2276354 ~ 2277081 (-) True XLOC_003824
TCONS_00007354 mRNA upstream 227622 2448781 ~ 2456656 (-) False XLOC_003827
TCONS_00007330 other downstream 1129389 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 1238156 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 1757974 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 1866203 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 1732564 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 3850801 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 3976117 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 4559549 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 4723141 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00008815 True 3041 mRNA 0.52 2 CM030126.1 12601291 ~ 12605260 (-)