RNA id: TCONS_00008739


Basic Information

Item Value
RNA id TCONS_00008739
length 522
lncRNA type sense_over
GC content 0.41
exon number 3
gene id XLOC_003843
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3385104 ~ 3494964 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AACGAATCCACACACGGATCAGTGTGTCACAGTGACACTGTTTTACCGGGGAACGGGATATACTCTGGCGATTTACATTCAGTCGCACTACAGCCACCGGCAATGCGCTGCTTTAATTTTAACTGAAAGACGGAATACCTGCAAACATGACGGTGGATTTTGAGGAATGTATTAAAGATTCTCCCCGATTCAGGGCGTCTCCTCGTTCGCTGTCGTCTTTCGGCAGTTTCCGCACATGGCTTATTTACACTCCTCCAAAGCACTGACAGAGGAGACTCCATCAGGACACACACCTGCCGTGAAGACTGCCTGCACTGTTTTTACTATCTGAGAGTAATATATGAGAATGCTGAAATCTGATACCATCAATTGATTCgtttttatatttgatatttccCCTTGGGCTGAGATTTTAAGCttaaatttctgttttttttaattattattattattttaatAATGAATGAAGCATCTTTCCTAGTGTTTGTTTCCCGTGACAATTAAAGGGAGATTTATTCTGAA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0045786 negative regulation of cell cycle biological_process
GO:0044770 cell cycle phase transition biological_process
GO:0044772 mitotic cell cycle phase transition biological_process
GO:0007049 cell cycle biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007377 lncRNA downstream 13077 3370355 ~ 3372027 (-) True XLOC_003842
TCONS_00007374 lncRNA downstream 18620 3351170 ~ 3366484 (-) False XLOC_003842
TCONS_00007372 lncRNA downstream 43417 3340299 ~ 3341687 (-) True XLOC_003841
TCONS_00007368 lncRNA downstream 76642 3304551 ~ 3308462 (-) True XLOC_003839
TCONS_00008738 lncRNA downstream 402722 2976603 ~ 2982382 (-) True XLOC_003838
TCONS_00008740 lncRNA upstream 55407 3550371 ~ 3552067 (-) True XLOC_003845
TCONS_00007386 lncRNA upstream 107216 3602180 ~ 3604827 (-) True XLOC_003847
TCONS_00007389 lncRNA upstream 130157 3625121 ~ 3629188 (-) True XLOC_003848
TCONS_00007402 lncRNA upstream 479979 3974943 ~ 3984481 (-) False XLOC_003854
TCONS_00007403 lncRNA upstream 489031 3983995 ~ 3987809 (-) True XLOC_003854
TCONS_00007376 mRNA downstream 3761 3367281 ~ 3381343 (-) False XLOC_003842
TCONS_00007375 mRNA downstream 4145 3364193 ~ 3380959 (-) False XLOC_003842
TCONS_00007373 mRNA downstream 18322 3345405 ~ 3366782 (-) False XLOC_003842
TCONS_00007371 mRNA downstream 41641 3336524 ~ 3343463 (-) False XLOC_003841
TCONS_00007370 mRNA downstream 50854 3321123 ~ 3334250 (-) True XLOC_003840
TCONS_00007379 mRNA upstream 28394 3523358 ~ 3535581 (-) False XLOC_003844
TCONS_00007380 mRNA upstream 29754 3524718 ~ 3533356 (-) False XLOC_003844
TCONS_00007381 mRNA upstream 35427 3530391 ~ 3535537 (-) True XLOC_003844
TCONS_00007382 mRNA upstream 55406 3550370 ~ 3552067 (-) False XLOC_003845
TCONS_00007383 mRNA upstream 68127 3563091 ~ 3571605 (-) False XLOC_003846
TCONS_00007330 other downstream 2296589 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 2405356 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 2925174 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 3033403 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 458759 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 2576996 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 2702312 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 3285744 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 3449336 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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