RNA id: TCONS_00007396


Basic Information

Item Value
RNA id TCONS_00007396
length 2505
RNA type mRNA
GC content 0.51
exon number 10
gene id XLOC_003851
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3892386 ~ 3907937 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTCTGCAGCGCGAGGCCTCACTGCACGCGCAAACACGGACGTTAGAACGGACCAGCGACATTTATAAACCCCAAAACCACAACACACAAACGCAGGACAATGTGGCGCGCCGGAGCGGTGAGTTTTGCGCTGATATGCTGTTTTTTCTGCGGGTCGGTGTGCGCGGACGGGCTGGTGAATGAAGATGTCAAGCGCACGCTGGATCTCAGCTCTCACCTAGCCAAAATCACCGCCGAGATCCAGCTCGCGAACCACGGATCCTCCCGGGCCAACAGCTTCATCATCGGGCTGGAGGAGGAGCTCGCCCCGCACCTGGCCTTCGTCGGCGCTTCTGTGAAGGGTGAAGAAGAGGAAGATGAACACCTTGAGCTGAAAGAGAAAACTGTTCATGGACAAAGTGGTAAATTCTTTGAGGCGCAGTTACAGTCTTCTTTGGCTCCGGGGGCTAAGCTGCGGGTGAAGGTGGAGACTGTGTTCAGTCACGTCCTGAAGCCGTTCCCCACACACATCACCCAGGCCGAGCGTCAGCTGGTGGTATTCCAGGGCAACCACTACCTGTACTCCCCGTACCCGACCCGCTCGCAGACCACACGGGTCCGACTGGCCTCTAAAACCGTGGAGAGCTACACTAAACTGGGCAACCCCACCAAGAGTGATGAGACCATTGAGTATGGACCATTCAAAGACATTCCTCCCTTCAGCCAGGATGTGATGAAGATCCATTATGAGAACAACTCGCCGTTCCTGACCATCAGCAGCATCACCCGCACCATCGAGGTCTCTCACTGGGGAAACATCGCAGTGGAGGAGACCATCGACCTGAGGCACACGGGCGCTCACCTGAAGGGCCCGTTCTCCCGCTACGACTACCAGAGGCAGTCTGACAGCGGCATTTCCTCCGTCAAATCCTTCAAGACCATCCTCCCAGCCTCCGCTCAGGACGTGTACTACCGCGATGAGATCGGGAACATCTCCACCTCCCACCTCCAGGTTCTGGATGATTCTGTAGAGGTTGAAATTCGTCCCCGTTTCCCGCTGTTTGGTGGCTGGAAAACCCATTACATCATTGGTTATAATCTTCCCAGCTACGAATACCTCTACAATCTAGGAGATCAGTATGCACTGAAGATGCGTCTGGTTGATCATGTCTATGATGACCAGGTTATTGACCAGCTGACTGTCCGACTGATCCTCCCTGAAGGAGCCAGaaacatccatATGGACACCCCGTACCCCATCAGCCGCAGTCAGGACGAGCTGCACTACACTTACCTGGACACGTTTGGCAGACCGGTGCTGGTGGCCACCAAGAACAATCTGGTGGAGCAGCACATTCAGGATGTTGTGGTTCACTACACCTTTAATAAGATCCTGATGCTGCAGGAGCCGCTGTTAGTTGTGGGAGCGTTCTATATCCTCTTCTTTACTGTCATCATCTACGTGCGCCTCGACTTCTCTATCACGAAGGATCCAGCAGCAGAGGTGCGCATGAAGGTGGCCTCCATCACAGAGCAGGTCTTGACTCTGGTGAACAAGCGTCTGGGTCTCTACCGCCACATGGATGAGGTCGTGAACCGCTATAAGCAGTCGCGGGACACGGGAGCGCTAAACAGCGGTCGGAAGACTCTGGAGGCTGAACATCGCACACTCACCAACGACATCACTGCCTTACAAACACGTCTCAAAGCTGAGGGCTCCGATCTGGCAGAAAAGGTTGGAGAGATCCAGAAGCTGGACGGGCAGCTGAAAGATCTGGTGTGTCGCTCCTCTCTGGACGCCGAGAGGTTGGTGGCTGGAAAGGTGAAGAAGGACGCCTACATCGACTCTGATAAAAACCTCACAGCCAAGCGGCACGAGCTGGTCAACCGCATCGACAGCCTTCTGGACGCCTTGTAAGTCAAACATCAGACGGCCGGGCGATGAAAATCAGCACTGCCCTCTGACACAATCGCCCACACTCAAACTGGACTCGGATCAGTAGAGTACACGCATGTGTGCAGTACAGCCTGATTTTGCAGAATGTTCACGCTGTTTTGTTGCTAAAaagtgtgtgtgagattgtgGACGAGGGTTTAGTGTTTGtaatcttttggttttgtttctgAATGTCAGATGCAGTCTTCATTTTTACAGTCAGGCAATTGAATATTCCTTTGCAGTTTTATTTGGAGTCGGGTTTAAAttgaaattagttttattttgtgatttttctcaACTGAAAAGAAGCGAACGTCTTTGCACTTACTGTTATCAAAGTGAATAATTCCTCCCCGTCCTAAAAACGTTGGTTTGAACCAAATGCTGAAATGATCCACACTGATATGCTCATGTTATTGCAGAGTTTCTTATTGGGGTTTTGTATGatcaatattattttgtttgttttttttaaggatgTACTTCAGTTCCACATTGAATGACATGAATGAGATTGATTTTTGTATGCCAGGGGGTAAATGTGGCAGGTTTTGCTGGTGGCCGTTAATAAACGTGTTAAAAGCCAGA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0018279 protein N-linked glycosylation via asparagine biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0008250 oligosaccharyltransferase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko00513 Various types of N-glycan biosynthesis
ko04141 Protein processing in endoplasmic reticulum
ko03050 Proteasome
ko05169 Epstein-Barr virus infection
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05017 Spinocerebellar ataxia
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-030131-4286 Predicted to be involved in protein N-linked glycosylation via asparagine. Predicted to act upstream of or within protein glycosylation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of oligosaccharyltransferase complex. Orthologous to human RPN1 (ribophorin I).

Ensembl:

ensembl_id ENSDART00000082409

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007389 lncRNA downstream 264079 3625121 ~ 3629188 (-) True XLOC_003848
TCONS_00007386 lncRNA downstream 288440 3602180 ~ 3604827 (-) True XLOC_003847
TCONS_00008740 lncRNA downstream 341200 3550371 ~ 3552067 (-) True XLOC_003845
TCONS_00008739 lncRNA downstream 398303 3385104 ~ 3494964 (-) False XLOC_003843
TCONS_00007377 lncRNA downstream 521240 3370355 ~ 3372027 (-) True XLOC_003842
TCONS_00007402 lncRNA upstream 67006 3974943 ~ 3984481 (-) False XLOC_003854
TCONS_00007403 lncRNA upstream 76058 3983995 ~ 3987809 (-) True XLOC_003854
TCONS_00008741 lncRNA upstream 220360 4128297 ~ 4132814 (-) True XLOC_003856
TCONS_00007408 lncRNA upstream 279085 4187022 ~ 4194697 (-) True XLOC_003858
TCONS_00008444 lncRNA upstream 356111 4264048 ~ 4281694 (-) True XLOC_003860
TCONS_00007394 mRNA downstream 27795 3858370 ~ 3865472 (-) True XLOC_003850
TCONS_00007393 mRNA downstream 32733 3847883 ~ 3860534 (-) False XLOC_003850
TCONS_00007392 mRNA downstream 33068 3847442 ~ 3860199 (-) False XLOC_003850
TCONS_00007391 mRNA downstream 246253 3630824 ~ 3647014 (-) True XLOC_003849
TCONS_00007390 mRNA downstream 246474 3630627 ~ 3646793 (-) False XLOC_003849
TCONS_00007397 mRNA upstream 1819 3909756 ~ 3959477 (-) False XLOC_003852
TCONS_00007398 mRNA upstream 1819 3909756 ~ 3959889 (-) False XLOC_003852
TCONS_00007399 mRNA upstream 2235 3910172 ~ 3954691 (-) True XLOC_003852
TCONS_00007401 mRNA upstream 63779 3971716 ~ 3987885 (-) False XLOC_003854
TCONS_00007404 mRNA upstream 83974 3991911 ~ 4024087 (-) False XLOC_003855
TCONS_00007330 other downstream 2804752 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 2913519 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 3433337 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 3541566 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007400 other upstream 45786 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007438 other upstream 2164023 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 2289339 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 2872771 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 3036363 6944300 ~ 6948018 (-) False XLOC_003898

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU276931 True 1200 lncRNA 0.43 3 CI01000057 2635237 ~ 2652560 (+)