RNA id: TCONS_00007397


Basic Information

Item Value
RNA id TCONS_00007397
length 5413
RNA type mRNA
GC content 0.50
exon number 30
gene id XLOC_003852
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 3909756 ~ 3959889 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gggttaattttttttcctctcgGTTTCTTAATAAATCAATCAACCTCCGTGTTGAATGTGTGTCAGCCCTCAGACAGCTCTCAGAGACAGCTGATCAGACACGGACGgCTCTTATGATGGGCTCAAAGCGCCGGAGAGCCACTTCTCCGTCCAGCAGTGTGAGTGGAGGAGATTTTGAGGACAGCCAATCCACATCCATATCTTCAACCAGTCGGAAGAGAAGAAGAATCGCAAACATTCCCACCGTTGACCCTATTGCGGTGTGTCATGAGTTGTACAACACTATCAGAGACTATAAGGATGACCAGGGCCGGATGCTGTGTGAACTCTTCATCAGAGCACCAAAGAGAAGGAATCAGCCAGATTACTATGACGTGGTGTCACAGCCCATTGATATGATGAAGATCCAGCAGAAGCTGAAGATGGAGGAGTATGACGATGTTGAGCAGCTCACAAGCGACTTTCAGCTCTTATTCAGTAATGCCAAGACATACTACAAACCTGAAACTCCAGAATACAGAGCAGCTTGTAAACTGTGGGATCTGTATATTCGGACCAAAAACGAGTTTGTGCAGCGAGGAGActatgatgaagatgatgatgatgacgacccACAGGAGAACCTCGGAGGAGCCACAGAGGAGGAGTCTATGTCGAGCCTTAAGGAAGTTCTTGGGATGCTTCTGGATGCTGTGTTGACCTACACTGAACACGGCCGCCTTATTAGCGAACTTTTCCAGAGACTTCCCTCTAAAATGCAATATCCAGATTATTATGCTATTATTAAAGAACCAATCGATCTGAAGAGCATCGCACACCGAATACAGATGTGCTACTATAAAAGTGTAAACCATATGGCTAAAGACATTGACTTGTTAGTCAAAAATGCCAAAACCTACAATGAACCCGGATCACAAGTGTTTAAAGATGCGAACACAATCAAGAAGGTCTTTGCGCAGAAAAAACTGGAGCTCGAACATTCTGAACCTATTAAATGCAGCATCAGGATCAGGAACAGAAGGTTTGCTCATGGAGACAGACTCTCCTGCATCACTACAGCTTTACAATATGGCTCCGAGAGTGAAGAGGATGCCATACTGACCGGCTCTGTTCATTACGATGAGGTCGAATCAGAGGCCGAGAGCATCCACTCCAGCATGGACGTGAGTAACCCGATCTTCCAGATGTATGAGGCGGTGCGGGGTGTCAGGAACAGTCAGGGGCAGCTCTTGGCCGAGCCCTTTTTCCAGCTGCCATCCCGGAAAGACTATCCCGACTACTTCCAGCAGATCAGCCATCCAGTCTCGCTCCAGCAGATACGGAGTAAGATGAAGAATAATGAGTATGAAAGTGTGGAGCAGATCGACACAGACCTGAACCGGATGTTTGAGAACGCCAAGCGCTACAACGTTCCCAGTTCTCAAATCTACAAACGTGTGCTGAAGCTGCAGCACATATTGCAGatgaagaGAAAAGAGCTGACGAGGAGAGATGATGAAGATGGCGACAGTAGGCTCTCGTCTACTCTGTCTGACGGCGGCAGCACCAAGCGCAAAAGCCATAAGAAGAACACAAAGAAGAATCGCATGAAGGCTCTGCTTGCTGCGGTGGCAGAGACTCGAGAGATGGGCACAGGCCGGAGACTCTGCGATCTCTTCATGGTCAAACCCTCCAAAAAAGACTATCCAGACTACTACAAGATCATCCTGGAGCCAATGGACATGAGGATCATAGAGCACAACATCCGCTCGGACAAGTACCCCAACGAGGACTCCATGATGGAGGACATGAAGCTGATGTTTCGTAACGCACGCCACTACAACGAAGAAGGCTCTCGCGTTTACAATGATGCCAACATTCTGGAGAAGATATTACGAGAAAAACGGAAGGAGCTCGGACCCCCGCCGGATGACGACGAGATCGTTTCACCCAAGCTAAAAATTAGGAAGAGTGGCATATCTCCAAAAAAGTCCAAGTATCTGACCCCTCTGCAACAGAAGCTCAATGAACTCTATGAAGCTGTGAAGAACTACACCGACAAGCGTGGACGGCGTCTGAGCACAATCTTCCTCCGTCTCCCGTCCCGTGCTGAGCTTCCAGATTACTACGTGGCCATCAAGAAGCCCATTGACATGGAGAAGATCAAGAGCCACATGCTGGCCAACAAGTACCAGGACGTAGACGCTCTGGTGGAAGACCTGGTGCTGATGTTCAACAACGCCTGCACCTACAATGAACCCGAATCGCTGATCTACAAAGATGCGTTGGTGCTTCACAAAGTGCTATTGGAGACCAGGAGAGACCTGGAAGGGGGCGATGATGCCCATGTCCCGGATGTTGCGCGGCTCATCCAGGAGCTCGTTCGCAATCTTTTCGTCTCGGTTCTTGGTCATCAAGATGACGAGGGACGATGTTATAGTGATTCACTAGCTGAGATTCCAGCAGTCGATCCCAACTGTTCTGATAAGACGCCGTTGAACTTTGAGATCATCAGGGCTAATGTGGATAAGGGCCGTTACAGGAGACTAGATGTGTTCCAGGACCAAATGTTTGAAGTTTTGGAGAAAGCCAGACGCCTGCACAGGACGGACTCTGAGATCTTTGAGGACTCTGTGGAGCTCCAGCAGTTCTTCATCCGCATCAGAGATGAGCTGTGTAAGAACGGAGAGATCCTGCTCACGCCGGCCCTCAGTTACACCATTAAACATCTGCACAGCGACGTGGAGAAGGAGAAGAAGGAGAAGCTGCCTAAAGAGTATGAGGAGGACAAACTCAAGAGAGAGGAGGAGAAGAAAGAGGCAGAAAAGAGCGAGGACACGGCGGGCGGAGGATGGCAGGGAGCCCTGCAGCGCAACTACAGCCAGGACTGCAGCTTTAAGGACAACATGTACCATGTGGGTGACTATGTGTATGTGGAGCCCACCGAACCGAACCTGCAGCCACACATCGTCTGCATAGAGCGCCTCTGGCAGGACGATGCAGGAGAGAACTGGCTTTATGGCTGCTGGTTCTACAGACCCAACGAAACATTTCACCTCGCTACACGCAAGTTCCTTGAGAAAGAGGTTTTCAAAAGCGACTATTACAACAAAATCCCTGTCAGTAAAATCCTGGGCAAATGCGTCGTCATGTTTGTAAAGGAGTATTTCAAACTTCAGCCTGACAGCTTTCGTCCTGAAGATGTTTTCGTTTGCGAGTCTCGCTATTCTGCCAAAACCAAGTCCTTCAAAAAGATCAAGATGTGGACGATGCCGCTGAGctcggtgaagtttgttcctcgtgAAGTGCCTTTGCCGGTGGTTCGTGTGGCCTCCATGTTTGCACCCAAACAGGAGAGTGAAAAGCCTCCTGAAGTGACCGAAGACGACAAGGCTTTACCATCTGTAATTGATAAGGAGAAAGAGGACATCACTTTGGAGGTGAATAATGGAGAACCGGGCTGCCAGTATTATGAGCAGCTCTGCTACAACAACATCTGGCTGAAAGTGGGAGACTGTGTCTACATCCGCTCTCATGGGCTCGTACGCAACCGCGTGGGCAGGATAGAGAAGATGTGGGTACGAGACGGCGCTGCCTATTTTTTCGGGCCCATTTTCATCCATCCTGAGGAGACCGAGCACGAACCGACCAAGATGTTCTACAAGAAGGAAGTGTTTCTCAGTAACCTGGAAGAATCATGCCCTATGACCTGTATCGGAGGGAAGTGTACAGTGTCTTCTTTCAAAGATTTCCTGTCATGCCGGCCGACTGAGATGCCGGAGGAGGACGTGTTGCTGTGTGAGAGCCGCTACATCGAGAGCGAGAAGCAAATGAAGAAGTTTAAAGGGCTGAAGCGTTTCTCTCTGTCCGCCAAAGTAGTGGAAGATGAAATCTATTACTTCAGAAAGCTCATCGTGCCTCAGAAGGAGCCGTCTCCACTGCTGGAAAAGAAGATCGAAGAGTTGGAAGCCAAGTTTGCGGACATGACGGATGAAGAGCTGGATGATTTGGGTGATGATGATGGAGACGGGTCTGATGCTCACTGTATGCCGCAGTTACAGACACAGCTGAGCGGAGACATGGACATGCTGCATTATGCTCCACAGCAGTCTGTGCCAAAGTCGATTAAGGGTCTTTCAAAGAAAGAGGGTGCGAAGAGGAAGATCAACATGAGTGGCTACATCCTCTTCAGCAGTGAGATGAGAGCTGTAATCAAGGCCCAGCACCCAGACTTCTCCTTCGGGGAGCTCAGCCGACTGGTGGGCACCGAGTGGAGGAACCTGGAGGCAACAAAGAAAGCTGAATATGAAGAGCGAGCAGCTAAAGTGGCGGAGCAGCAGGAGCGGGACAGAGCGCATCAGGGCTCCCCCAGAGCAGGTACTCCAGCAGGGCTGCTCATGGGTGTAGTTCCTCTTCCGACCCCCATGGGGCTGGTTCCTATGGCAGGCATGCTGGGTAGTTTCAGGCCACCCATGTTCACTTGTCAGGGGCCTGGCATGATTAACATGCCTCCACATCCCATGGGACTGCCTGCATTACCCCTAAACTTCCCGTGGGGTTTGCCTGGCATGCCGTTTCATGGTATGAATGGCATGGCTCCAGGTTCAACAGGGAGCGCTTACGGGACTCAGATGGGTGGGATGAACTCAGGCCAGCAGGTTCCTCCACCGTACCCAGGACAGGGTCAGGTTGGTCAGCCGGCTCACCAGCAGCCCTCCACCCCCATGTTTGTGGCTCCTCCACCAAAACCCCAGCGGTTGCTGCATTCAGAGGCCTACCTGAAGTATATTGAAGGACTCAGTGCTGAATCTACTACTGTCAGCAAGTGGGACCAAACACTCTCTGCTCGCAGGAAAGATGTGCGGCTGACGAAAGAGCAGGAGAGCCGTCTGCCGTCTCATTGGCTGAAGAGTAAAGGAGCTCACAAGACCATGGCGGACGCTCTGTGGCGACTGCGAGACCTGATGCTGCGGGACACACTAAACatccaacacacctacaacatcCACAATATCTGAAGCATTCCCCCCCTGACGAGCCCCTCTCTAGTGTTGTCATGTTGTGATTGGATAACGTTCTGTCTAGGATTTTGTAATGCTCTATTTTGTCTGTAGGCTTTGTTAGCGTCGATGTTTCTTGATAGCACTTTCAATTGGCTGATTTTCTATGTTGGCTATTAAATGTTCTTAGACcaatttaaacattttcataaaatgtttgacCGTAATGTTTGCGCGTTGTACTTTGTGACGGGATTGAGTTAGGACTGTTGTGAAAGAATGTACGAGATGGCCGTTTTTTGGGGTCTTGGTTCATAAAGTGGTATATGACACAAAGTTATAAGCCTATTTTTCATATCATCTGTTGTTTCAGCTATAATCATTTTGGAATGGACGCCATCTGTCTGTTGTTTCAATAAACTAACAGTGACAGA

Function

GO:

id name namespace
GO:0006338 chromatin remodeling biological_process
GO:0005634 nucleus cellular_component
GO:0016586 RSC-type complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG:

id description
ko05225 Hepatocellular carcinoma
ko03021 Transcription machinery
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-080926-4 Predicted to enable DNA binding activity and chromatin binding activity. Predicted to act upstream of or within chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of RSC-type complex. Is expressed in somite. Human ortholog(s) of this gene implicated in renal cell carcinoma. Orthologous to human PBRM1 (polybromo 1).

Ensembl:

ensembl_id ENSDART00000045971

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00007389 lncRNA downstream 280568 3625121 ~ 3629188 (-) True XLOC_003848
TCONS_00007386 lncRNA downstream 304929 3602180 ~ 3604827 (-) True XLOC_003847
TCONS_00008740 lncRNA downstream 357689 3550371 ~ 3552067 (-) True XLOC_003845
TCONS_00008739 lncRNA downstream 414792 3385104 ~ 3494964 (-) False XLOC_003843
TCONS_00007377 lncRNA downstream 537729 3370355 ~ 3372027 (-) True XLOC_003842
TCONS_00007402 lncRNA upstream 15466 3974943 ~ 3984481 (-) False XLOC_003854
TCONS_00007403 lncRNA upstream 24518 3983995 ~ 3987809 (-) True XLOC_003854
TCONS_00008741 lncRNA upstream 168820 4128297 ~ 4132814 (-) True XLOC_003856
TCONS_00007408 lncRNA upstream 227545 4187022 ~ 4194697 (-) True XLOC_003858
TCONS_00008444 lncRNA upstream 304571 4264048 ~ 4281694 (-) True XLOC_003860
TCONS_00007396 mRNA downstream 1819 3893267 ~ 3907937 (-) True XLOC_003851
TCONS_00007395 mRNA downstream 12689 3892386 ~ 3897067 (-) False XLOC_003851
TCONS_00007394 mRNA downstream 44284 3858370 ~ 3865472 (-) True XLOC_003850
TCONS_00007393 mRNA downstream 49222 3847883 ~ 3860534 (-) False XLOC_003850
TCONS_00007392 mRNA downstream 49557 3847442 ~ 3860199 (-) False XLOC_003850
TCONS_00007401 mRNA upstream 12239 3971716 ~ 3987885 (-) False XLOC_003854
TCONS_00007404 mRNA upstream 32434 3991911 ~ 4024087 (-) False XLOC_003855
TCONS_00007405 mRNA upstream 35270 3994747 ~ 4023940 (-) True XLOC_003855
TCONS_00007406 mRNA upstream 78563 4038040 ~ 4137242 (-) False XLOC_003856
TCONS_00007407 mRNA upstream 189331 4148808 ~ 4175773 (-) True XLOC_003857
TCONS_00007330 other downstream 2821241 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 2930008 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 3449826 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 3558055 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007438 other upstream 2112483 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 2237799 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 2821231 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 2984823 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 3156770 7116247 ~ 7116363 (-) True XLOC_003904

Expression Profile

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