RNA id: TCONS_00007412


Basic Information

Item Value
RNA id TCONS_00007412
length 912
lncRNA type lincRNA
GC content 0.45
exon number 6
gene id XLOC_003862
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 4286630 ~ 4290096 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTACAAACGAGATAATTTGGCGAGAAATAACGAACTACCGATGGATTTCTGCCAGAATCAAGAATCAAACATGATGACCAACAACAACACAAGAAGATTGTTCCAGCGGTTCTCCAAATATCAAGGACTTGCAGTTGTTCTTGATGAGGAGGAGGACGCTCTATTCAGAGCTAGTCCAGCCGCTTACAAAGTGTCTAAGACTGCCTCTGAGAATAACCAGATTTCTCAGGTTGAGAGTGTTTCTCCAAAAGACACTTTCTCTGGGAACGACGGTGTCTCTGTGGTAGTTTTCCTACATGAGAGTGATGGTGTCTCTGAGACGTTTCTTTGCTCTGAGACTGACACCTCCTTTCCGACAAACCGTGTCTCTGTGATGGACACCTTCTCTGAGATTGACTCTGTCTCTCAGATTGAAGGTGTTGCTCCAGTGGACACTTTCTCTGAGACTGATGATGTCTCTCCAACTGATGGTGTTCCTCCAATGGACACCTTTTATGAAACTGAAGCTGTCTCTCAGATTGATGGTGTGCCTTTAACGCACACTGTCTCTGAGACTGACACTGTCTCTCAGATCGATAGAGTTCCTATTATGGACACTTTCTCTGAGATTGACTCTGTCACACATCACAACCAATACCCACCCAGCACAAGTAAGATGTACTCTTACTTTGAGTATCGCAGGAAGAAGGCTGACCCTACAAACACAAGAAGACTGATTCAGCGTTTTTCTGAATATCAAGGACTTGCAGTTGTTCTTGATGAGGAAGAAGATGATATATTCAGGGCGAGTCCAGCTTTCAAAGTGTCTAAGACTGCCTCTGAGACTAACCAGATTTCTCAGATTGAGAGTGTTTCTCCAAAAGACACTTTCTCTGAGAATGACGGCGTCTCTCAGGGTGATGGTGTGCCTTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000158762

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008444 lncRNA downstream 4936 4264048 ~ 4281694 (-) True XLOC_003860
TCONS_00007408 lncRNA downstream 91933 4187022 ~ 4194697 (-) True XLOC_003858
TCONS_00008741 lncRNA downstream 153816 4128297 ~ 4132814 (-) True XLOC_003856
TCONS_00007403 lncRNA downstream 298821 3983995 ~ 3987809 (-) True XLOC_003854
TCONS_00007402 lncRNA downstream 302149 3974943 ~ 3984481 (-) False XLOC_003854
TCONS_00007421 lncRNA upstream 8995 4299091 ~ 4302567 (-) True XLOC_003864
TCONS_00008742 lncRNA upstream 19180 4309276 ~ 4350341 (-) False XLOC_003865
TCONS_00008743 lncRNA upstream 21201 4311297 ~ 4333998 (-) True XLOC_003865
TCONS_00008445 lncRNA upstream 60382 4350478 ~ 4353433 (-) True XLOC_003866
TCONS_00008744 lncRNA upstream 145177 4435273 ~ 4470674 (-) True XLOC_003867
TCONS_00007411 mRNA downstream 620 4283014 ~ 4286010 (-) True XLOC_003861
TCONS_00007409 mRNA downstream 50819 4205567 ~ 4235811 (-) False XLOC_003859
TCONS_00007410 mRNA downstream 66463 4205896 ~ 4220167 (-) True XLOC_003859
TCONS_00007407 mRNA downstream 110857 4148808 ~ 4175773 (-) True XLOC_003857
TCONS_00007406 mRNA downstream 149388 4038040 ~ 4137242 (-) False XLOC_003856
TCONS_00007413 mRNA upstream 3192 4293288 ~ 4300831 (-) False XLOC_003863
TCONS_00007414 mRNA upstream 3218 4293314 ~ 4300831 (-) False XLOC_003863
TCONS_00007415 mRNA upstream 3510 4293606 ~ 4298288 (-) False XLOC_003863
TCONS_00007416 mRNA upstream 5116 4295212 ~ 4298288 (-) False XLOC_003863
TCONS_00007417 mRNA upstream 5239 4295335 ~ 4298288 (-) False XLOC_003863
TCONS_00007400 other downstream 332793 3953723 ~ 3953837 (-) True XLOC_003853
TCONS_00007330 other downstream 3198115 1069406 ~ 1088515 (-) False XLOC_003806
TCONS_00007326 other downstream 3306882 923795 ~ 979748 (-) True XLOC_003803
TCONS_00007304 other downstream 3826700 459815 ~ 459930 (-) True XLOC_003793
TCONS_00007296 other downstream 3934929 349113 ~ 351701 (-) True XLOC_003787
TCONS_00007438 other upstream 1781864 6071960 ~ 6072066 (-) True XLOC_003881
TCONS_00007441 other upstream 1907180 6197276 ~ 6206589 (-) False XLOC_003884
TCONS_00007456 other upstream 2490612 6780708 ~ 6782076 (-) True XLOC_003894
TCONS_00007463 other upstream 2654204 6944300 ~ 6948018 (-) False XLOC_003898
TCONS_00007477 other upstream 2826151 7116247 ~ 7116363 (-) True XLOC_003904

Expression Profile

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