G78903


Basic Information

Item Value
gene id G78903
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 3231127 ~ 3232742 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU116775
TAGTTACTTTTTTGCAGTTCACTTATTgacaaattattattcatttgttatgaAATCAACTATGGTTAATAATTAACCTCAAAGTGCTGGACCAGCTGTTTGGGTTTGACTCTGATCATGAGCTCATATTTGCCAAATTGTCGCTTCAGAAGTTCCTCATAGGTGAGAACAAATATGACACTGCTGTCTGCTGCGACATTCACGTTAACAGAAAACTTCTCCATTTTTCGACCGGAAGCCCTGGAACACCGGAACACAAGTTAGTTAGTAGTACATTAACAGCAGtttcaagttttatttattcctctTCTCACTTGACTAAACCAGCAGTCTGTCCAGATGACACAGCCTTCTGATACTGCTGCTTGGCCTTCTCTTTTTCCTTCACCACACCTGTGAATGTCTTGCCATCAATCTCATGCTGAAGTTGGTGATGAAGGACGTCTTAGGTAACTCCACCTCAAAAGACACTTCTTGTGAGACGTTGGCCTTGTTGAGAGCTTTAGTGGTCATGACAGTGTGGGCAAAACGTGACGTCACCTTGCAGTCCACCTTTATGCTCTGCACCTCTATctgaaagacagagaaaaaaacacatagaaGTAAATGGGGCAAATGTCTCTAatatattgctgttttactgcTATATAACAATTTGGTTACACTTGAAGTGTCCTTGTTACGGTGTAATTCTACATTTAAGCaccaattattattaatcagcTACACATATAAGATTGGGATTAGGGTAACTTGCATGTAATTTACACCTTAACAtgaaaaaagcatttgtaaaaagcattttcaaaacCTGGAAAGCTTGATAAATCATTAATTCTACACAAAGCGTTCAGTACACTTTTCAGCAGTGATTACTTCTATTGACTTAGACTGTGGTCATTTCAGGACAAAGCTTTTGAACTCTTTCCACACGATTGACAAGGTATCTCTCGTCATTTAGGTTAAACAACGCTTCCCTGCCAAAGATGAGTTTTTACGGCAATCCCTGTTTTAGGTGTATTACGGTAGGGAACACCCTAACAATGAGTTACTGGATTCCCAGAGTCTACCGGGCTCAAAAAATAAGGATcttcataaatgaaataatcagAGACAATATAGATAATAACGtggccatatatatatagatcatgCATGTAGATTGTGTTTTGTGTCAGACAGGGATCAGATaaggtacagtaaaaataacccAAGAATAGCCCACATTCATTTCTAATTAACTTGTAAATCACGAAGACTCGACAGACAAACGTGTGAAAGGTAATAGAGTTCCCACCTCAGGACTGCTCACGCTTCTCTTCTGTGAGgagacaaataaaacattttttagatgGCGACAAAAAGTGTGTAGatgtaaaaaatgttgtatattataCTTCATGTGTATTATTTGACACTTTTATAATtcttaaatatagttttaatacTGGTCATTAGTGGTTTTAACCATTTTGAGTAGAAAGGtctactttttttaaaggaaaataaatgatcataaaGAGTTC

Function

GO:

id name namespace
GO:0048732 gland development biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0001889 liver development biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU116775 True 1526 lncRNA 0.37 2 3231127 3232742

Neighbor

gene id symbol gene type direction distance location
gnl3 gnl3,LOC107714492,LOC107680445,LOC107566445 coding downstream 172697 3052696 ~ 3058430 (-)
LOC122354702 NA coding downstream 175354 3055697 ~ 3055773 (-)
camk1b LOC107714490,LOC107566450,LOC107680448,LOC107572399 coding downstream 194019 2996499 ~ 3037108 (-)
LOC122354490 gata1a,LOC107727848,LOC107581944,LOC107685680,LOC107655033,LOC107749468 coding downstream 419763 2807984 ~ 2811364 (-)
trnai-aau_28 NA coding downstream 444181 2786874 ~ 2786946 (-)
si:dkey-33m11.8 si:dkey-33m11.8,LOC107555995,LOC107699328,LOC107751009,LOC108436238 coding upstream 24137 3256879 ~ 3264114 (-)
pusl1 NA coding upstream 53219 3285961 ~ 3299062 (-)
si:ch211-160o17.6 LOC107699340,LOC107714505,LOC107555993 coding upstream 148743 3381485 ~ 3385791 (-)
lhfpl5a lhfpl5a,LOC107592561,LOC107680427,LOC108435128,LOC108254808,LOC108246860 coding upstream 221668 3454410 ~ 3456934 (-)
LOC122354690 NA coding upstream 446020 3678762 ~ 3678926 (-)
G78854 NA non-coding downstream 116557 3114297 ~ 3114570 (-)
G78848 rpn1,LOC107714495,LOC107699351,LOC107573146,LOC107680451 non-coding downstream 151459 3079014 ~ 3079668 (-)
LOC122354391 NA non-coding downstream 431099 2799533 ~ 2800028 (-)
G78774 NA non-coding downstream 435831 2795022 ~ 2795296 (-)
G78773 NA non-coding downstream 530398 2700513 ~ 2700729 (-)
G78918 LOC107751023,LOC107680412,LOC107555990,LOC107699319,LOC107714481 non-coding upstream 33442 3266184 ~ 3266672 (-)
G78919 NA non-coding upstream 34014 3266756 ~ 3267675 (-)
G78969 NA non-coding upstream 180132 3412874 ~ 3414924 (-)
G79010 NA non-coding upstream 421540 3654282 ~ 3657289 (-)
G79069 NA non-coding upstream 483947 3716689 ~ 3719414 (-)
G78853 gata2a,gata2,LOC107714496 other downstream 117435 3112933 ~ 3113692 (-)
spcs1 spcs1,LOC107566449,LOC107714491,LOC107680421,LOC107699355,LOC107744856,LOC107572401 other downstream 182903 3046738 ~ 3048224 (-)
trnai-aau_68 NA other downstream 244596 2986458 ~ 2986531 (-)
trnaf-aaa NA other downstream 246010 2985044 ~ 2985117 (-)
trnap-cgg_28 NA other downstream 246778 2984278 ~ 2984349 (-)
cdab cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129 other upstream 21121 3253863 ~ 3256212 (-)
G79003 NA other upstream 307259 3540001 ~ 3541055 (-)
LOC122354343 cpne5b,LOC107680428,LOC107714485,LOC107555996,LOC107699334,LOC107751002,LOC108436414 other upstream 580763 3813505 ~ 3834923 (-)
G79085 zgc:113223,LOC107745344,LOC107698001,LOC107556176 other upstream 680506 3913248 ~ 3914635 (-)
si:dkey-197i20.6 si:dkey-197i20.6,LOC107745350,LOC107710445,LOC107658773,LOC107669007,LOC107592569 other upstream 729239 3961981 ~ 3965791 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003848 itih3a coding NC_007122.7 CM002895.2 3614326 ~ 3629216 (-)