trnap-cgg_28


Basic Information

Item Value
gene id trnap-cgg_28
gene name NA
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 2984278 ~ 2984349 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_1797
ggctcgttggtctaggggtatgattctcgcttcgGGTgtgagaggtcccgggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_1797 True 72 tRNA 0.61 1 2984278 2984349

Neighbor

gene id symbol gene type direction distance location
LOC122354490 gata1a,LOC107727848,LOC107581944,LOC107685680,LOC107655033,LOC107749468 coding downstream 172914 2807984 ~ 2811364 (-)
trnai-aau_28 NA coding downstream 197332 2786874 ~ 2786946 (-)
trnaf-gaa_28 NA coding downstream 197491 2786710 ~ 2786787 (-)
trnaf-gaa_27 NA coding downstream 199058 2785148 ~ 2785220 (-)
trnap-cgg_6 NA coding downstream 199664 2784543 ~ 2784614 (-)
camk1b LOC107714490,LOC107566450,LOC107680448,LOC107572399 coding upstream 12150 2996499 ~ 3037108 (-)
gnl3 gnl3,LOC107714492,LOC107680445,LOC107566445 coding upstream 68347 3052696 ~ 3058430 (-)
LOC122354702 NA coding upstream 71348 3055697 ~ 3055773 (-)
si:dkey-33m11.8 si:dkey-33m11.8,LOC107555995,LOC107699328,LOC107751009,LOC108436238 coding upstream 272530 3256879 ~ 3264114 (-)
pusl1 NA coding upstream 301612 3285961 ~ 3299062 (-)
LOC122354391 NA non-coding downstream 184250 2799533 ~ 2800028 (-)
G78774 NA non-coding downstream 188982 2795022 ~ 2795296 (-)
G78773 NA non-coding downstream 283549 2700513 ~ 2700729 (-)
G78771 NA non-coding downstream 286806 2697228 ~ 2697472 (-)
G78769 NA non-coding downstream 287581 2696409 ~ 2696697 (-)
G78848 rpn1,LOC107714495,LOC107699351,LOC107573146,LOC107680451 non-coding upstream 94665 3079014 ~ 3079668 (-)
G78854 NA non-coding upstream 129948 3114297 ~ 3114570 (-)
G78899 LOC107556004,LOC107699348,LOC107714497 non-coding upstream 239386 3223735 ~ 3241319 (-)
G78903 NA non-coding upstream 246778 3231127 ~ 3232742 (-)
G78918 LOC107751023,LOC107680412,LOC107555990,LOC107699319,LOC107714481 non-coding upstream 281835 3266184 ~ 3266672 (-)
trnai-aau_67 NA other downstream 735 2983470 ~ 2983543 (-)
trnaf-gaa_80 NA other downstream 895 2983312 ~ 2983383 (-)
trnap-ugg_9 NA other downstream 1501 2982706 ~ 2982777 (-)
trnai-aau_66 NA other downstream 2258 2981947 ~ 2982020 (-)
trnaf-gaa_79 NA other downstream 2418 2981788 ~ 2981860 (-)
trnaf-aaa NA other upstream 695 2985044 ~ 2985117 (-)
trnai-aau_68 NA other upstream 2109 2986458 ~ 2986531 (-)
spcs1 spcs1,LOC107566449,LOC107714491,LOC107680421,LOC107699355,LOC107744856,LOC107572401 other upstream 62389 3046738 ~ 3048224 (-)
G78853 gata2a,gata2,LOC107714496 other upstream 128584 3112933 ~ 3113692 (-)
cdab cda,LOC107714500,LOC107751011,LOC107572847,LOC107680435,LOC108436250,LOC105898129 other upstream 269514 3253863 ~ 3256212 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018411 CR385078.6 non-coding NC_007131.7 CM002904.2 47120504 ~ 47125583 (-)
rainbow trout (Oncorhynchus mykiss) trnap-cgg-214 NA coding NW_023493868.1 JAAXML020000511.1 4803 ~ 4874 (-)