CI01000057_00938618_00949690


Basic Information

Item Value
gene id CI01000057_00938618_00949690
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 938071 ~ 949779 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000057_00938618_00949690.mRNA
ACAGACAGCTGACCGACAGAAACCTGCTCCGCTCTCTCTGACTGAGAGAACACACATCACAACACTGCAGTGACAACTGATCACAGAAAATGACACAGAAAAAGGTAAGGTTGCCCCGACGGTCCAAACCGTTGAAGGAAACATGCCTCCAAGCTACGACGAGGCCAATGCAGGTTTATTCCATTCTGATGCTGCAGCTCTTTTCAACAGTCGCAGTCATCGCCCTCTTCACATTCCATGCTCCAGTGAGGATGTACATTCAAACACATCCTATTTTATACTCCATATCCAATCTTCTGTTTCTGATCACATATATCTCATTGGCTTGCTGTGGTGATTTGAGTTTCTACAACACCAAGTCTGTGTTGCTGTGCATCGGCATCACTGCCACAGTGTGCCTGTGCGTCACCATCTTCAGCTTTCAGAGCAAGATTGACATCACCTCATACCAAGGTCTTCTCTTCATTCTGTGTATGGTCATGTTTTTCTGTGCTATTGTCATGGGATTGGTGGTTCCCTTTGGCTATGTCCCCTGGTTACATGCGGTCTATGCCAGCGTTGGAGCTGTTGTATTTACCATGGTTGCTAATGGGTATGAGAAAGCTAGAAATAATAGAGAAAAGAAGATTGAGCATAATGAAGAATCACCAAGCTATAGTATGACACAGATAACAAGAAGGGACTCCCCTACAGGGAAGGATCTACCTCTACTTTTCTGCAATCTCAAACACGGGTCATACTAAAGAGGCCTATAAAAGTACCCATGTTAAAGGGTAAAGGGGAACGTTTATCTCTACGTCAAGACTCAACAGTAGTTGGGGAGGGAGGCAAATGAAATAGAAGGATGCTTGCAGACTGCCCACCACAATTTTGTTTACCTTGCATCAACCCTAAGGGGGTACCAGCCAAGCAACCCATCCACAGTGGAGCATACAATTCTACTTTAGACCCTAACATCGGGGAGAATATAGCTGTACCCTGGTAAAAGCATGCCAAGAAAGAGATGCCAAAGGCAGTCTACCTCTGCCCACAGCCACTGACCAATGCCACACTCATCTTGGGGGGCAGGTGAAGGGGACAGGATGTCTTCAGACACATCCCAACCTACAACCTAATCTGAAAGTATCTTTGACAAAAACGCGCCGGCATGCATAAGTAATCCAGCACAGAGCTGCTCAGAGCGCATATGAGAGCGGTTTCCGTTTCCTGTTTTACTTTCAACCAAAAACCTGCTCCATTCCTCTGCCAATTTGGCAATGGTTACTTTCAATTCTCCCTCAGGAGAATAAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000057_00938618_00949690.mRNA True 1290 mRNA 0.46 10 938071 949779

Neighbor

gene id symbol gene type direction distance location
CI01000057_00873279_00873578 NA coding downstream 64493 873274 ~ 873578 (-)
CI01000057_00628126_00628851 NA coding downstream 307905 627715 ~ 630166 (-)
CI01000057_00561471_00562830 NA coding downstream 375214 561229 ~ 562857 (-)
CI01000057_00534471_00559759 NA coding downstream 378312 533588 ~ 559759 (-)
CI01000057_00475661_00476027 NA coding downstream 462044 475392 ~ 476027 (-)
CI01000057_00956994_00965947 NR1D4B coding upstream 5854 955633 ~ 965947 (-)
CI01000057_01083731_01092073 NA coding upstream 133935 1083714 ~ 1092631 (-)
CI01000057_01145522_01147560 NA coding upstream 194283 1144062 ~ 1147772 (-)
CI01000057_01189209_01190703 SMUG1 coding upstream 239134 1188913 ~ 1190703 (-)
CI01000057_01219430_01223491 HNRNPA1, HNRNPA1A coding upstream 269651 1219430 ~ 1223491 (-)
G244379 NA non-coding downstream 2212 933900 ~ 935859 (-)
G244475 NA non-coding downstream 66074 871777 ~ 871997 (-)
G244392 NA non-coding downstream 68172 868946 ~ 869899 (-)
G244386 NA non-coding downstream 69858 867739 ~ 868213 (-)
G244465 NA non-coding downstream 90592 845842 ~ 847479 (-)
G244516 NA non-coding upstream 1935 951714 ~ 952007 (-)
G244522 NA non-coding upstream 51344 1001123 ~ 1001347 (-)
G244524 NA non-coding upstream 58459 1008238 ~ 1029028 (-)
G244594 NA non-coding upstream 215397 1165176 ~ 1167492 (-)
G244558 NA non-coding upstream 243166 1192945 ~ 1193239 (-)
G244358 NA other downstream 367043 570530 ~ 571028 (-)
CI01000057_01801708_01806454 LHFPL5, LHFPL5A other upstream 851805 1801528 ~ 1806454 (-)
CI01000057_01904867_01921400 NA other upstream 970277 1904533 ~ 1921905 (-)
CI01000057_03887278_03892054 ABHD8B, ABHD8 other upstream 2941956 3887203 ~ 3892054 (-)
CI01000057_04927533_04931127 CDK4 other upstream 3978965 4927533 ~ 4931420 (-)
G246780 NA other upstream 4261331 5086312 ~ 5283617 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003818 faim2b coding NC_007122.7 CM002895.2 1925804 ~ 1935883 (-)