RNA id: TU278003


Basic Information

Item Value
RNA id TU278003
length 541
lncRNA type antisense_over
GC content 0.49
exon number 6
gene id G244886
representative True

Chromosome Information

Item Value
chromosome id CI01000057
NCBI id null
chromosome length 6014843
location 2055118 ~ 2077524 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGATTTACAACAGGGGCAAAGTTAGTAGGCCCGTATAGCTGGACGGTCTTTAGACTCTGATGGTACGCCTCCAAAATCCCCTCAATACCATTACAGTAGGGATTTTCGATATTTCCATTTAGGGGAAACTCATGAGACACCCGTCCATCAGGGGGCAGCTTGGCTCCAAATCCCAGTGCAGGGAACATCTTGTCACTGTCATAGTCCTGGATGATTTCCCCCACTGCCTTCAGTGCCAGGGCGTAGGCGTTCATCTGGTAGGGGTTCATGTAATGGAGAGACGTGGACTGGGATGGGTTACCGTTAGAGGCGGTGAAATCGATGGCCACAGTGAAATTGATCTGGGTCCCTCCTTTGATGTAATCAAGGAAAGTCGACTCTGATTCCACTGAGAATGACAGCAGTGTCACCGTGCCCGAATTTACATATTTCTTCTTCTTCATCTTCTTCTTTGGATTCACCACCTCATACACATTGAACTGGCTCTGACCTCGGGCTAACTCTCTGTAGCTGGTGGTGAATTCACCGATGAAATCATGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU277929 lncRNA downstream 144149 1834717 ~ 1910969 (-) False G244814
TU277927 lncRNA downstream 144149 1906732 ~ 1910969 (-) False G244814
TU277928 lncRNA downstream 146620 1906732 ~ 1908498 (-) True G244814
TU277925 lncRNA downstream 221515 1833351 ~ 1833603 (-) True G244813
TU277924 lncRNA downstream 222062 1832592 ~ 1833056 (-) True G244812
TU278030 lncRNA upstream 27660 2105184 ~ 2105429 (-) True G244913
TU278027 lncRNA upstream 31568 2109092 ~ 2111515 (-) True G244910
TU278031 lncRNA upstream 34828 2112352 ~ 2112664 (-) True G244914
TU278032 lncRNA upstream 36421 2113945 ~ 2114154 (-) True G244915
TU278033 lncRNA upstream 45201 2122725 ~ 2148104 (-) True G244916
CI01000057_01904867_01921400.mRNA mRNA downstream 133213 1904533 ~ 1921905 (-) False CI01000057_01904867_01921400
CI01000057_01801708_01806454.mRNA mRNA downstream 248664 1801528 ~ 1806454 (-) False CI01000057_01801708_01806454
CI01000057_01707526_01708449.mRNA mRNA downstream 346669 1707495 ~ 1708449 (-) True CI01000057_01707526_01708449
CI01000057_01559593_01572133.mRNA mRNA downstream 482268 1559547 ~ 1572850 (-) True CI01000057_01559593_01572133
CI01000057_01542990_01546030.mRNA mRNA downstream 509088 1542797 ~ 1546030 (-) True CI01000057_01542990_01546030
CI01000057_02200951_02207673.mRNA mRNA upstream 123056 2200580 ~ 2207673 (-) True CI01000057_02200951_02207673
CI01000057_02248495_02254279.mRNA mRNA upstream 170822 2248346 ~ 2254318 (-) True CI01000057_02248495_02254279
CI01000057_02258394_02291730.mRNA mRNA upstream 180870 2258394 ~ 2291730 (-) True CI01000057_02258394_02291730
CI01000057_02374706_02384095.mRNA mRNA upstream 297025 2374549 ~ 2384849 (-) True CI01000057_02374706_02384095
CI01000057_02401903_02408835.mRNA mRNA upstream 324296 2401820 ~ 2411148 (-) True CI01000057_02401903_02408835
TU277965 other downstream 133697 1920056 ~ 1921421 (-) True CI01000057_01904867_01921400
TU277905 other downstream 249965 1805098 ~ 1805153 (-) True G244797
TU277370 other downstream 1484090 570530 ~ 571028 (-) True G244358
TU277369 other downstream 1484204 570530 ~ 570914 (-) False G244358
TU279491 other upstream 1814211 3895949 ~ 3897691 (-) True G246256
TU279998 other upstream 2851220 4928744 ~ 4931143 (-) False CI01000057_04927533_04931127
TU279999 other upstream 2851220 4928744 ~ 4931420 (-) True CI01000057_04927533_04931127
TU280085 other upstream 3133586 5211110 ~ 5283617 (-) False G246780
TU280026 other upstream 3846016 5923540 ~ 5925795 (-) True CI01000057_05925181_05926068

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU117055 True 1598 TUCP 0.44 3 CI01000018 1582913 ~ 1585662 (+)
tiger barb (Puntius tetrazona) TU117055 False 655 TUCP 0.48 7 NC_056709.1 3813633 ~ 3823098 (-)