Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU289048 |
| length | 688 |
| RNA type | TUCP |
| GC content | 0.44 |
| exon number | 2 |
| gene id | G254692 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000059 |
| NCBI id | null |
| chromosome length | 10376574 |
| location | 6260043 ~ 6261633 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU289030 | lncRNA | upstream | 131052 | 6128635 ~ 6128991 (+) | True | G254680 |
| TU289029 | lncRNA | upstream | 131603 | 6128186 ~ 6128440 (+) | True | G254679 |
| TU289028 | lncRNA | upstream | 132172 | 6126255 ~ 6127871 (+) | True | G254678 |
| TU289025 | lncRNA | upstream | 136244 | 6123584 ~ 6123799 (+) | True | G254675 |
| TU289024 | lncRNA | upstream | 137455 | 6122032 ~ 6122588 (+) | True | G254674 |
| TU289083 | lncRNA | downstream | 1751 | 6263384 ~ 6263821 (+) | True | G254723 |
| TU289060 | lncRNA | downstream | 6815 | 6268448 ~ 6269569 (+) | True | G254702 |
| TU289089 | lncRNA | downstream | 16551 | 6278184 ~ 6278446 (+) | True | G254729 |
| TU289124 | lncRNA | downstream | 85956 | 6347589 ~ 6349268 (+) | True | G254764 |
| TU289141 | lncRNA | downstream | 122232 | 6383865 ~ 6388530 (+) | True | G254780 |
| CI01000059_06236327_06242554.mRNA | mRNA | upstream | 17281 | 6236258 ~ 6242762 (+) | True | CI01000059_06236327_06242554 |
| CI01000059_06191634_06224354.mRNA | mRNA | upstream | 35661 | 6191634 ~ 6224382 (+) | True | CI01000059_06191634_06224354 |
| CI01000059_06182941_06185080.mRNA | mRNA | upstream | 74845 | 6182941 ~ 6185198 (+) | True | CI01000059_06182941_06185080 |
| CI01000059_06178290_06180532.mRNA | mRNA | upstream | 78875 | 6178217 ~ 6181168 (+) | True | CI01000059_06178290_06180532 |
| CI01000059_06129387_06130612.mRNA | mRNA | upstream | 129418 | 6129338 ~ 6130625 (+) | True | CI01000059_06129387_06130612 |
| CI01000059_06334992_06340282.mRNA | mRNA | downstream | 73249 | 6334882 ~ 6340606 (+) | True | CI01000059_06334992_06340282 |
| CI01000059_06362860_06365608.mRNA | mRNA | downstream | 100893 | 6362526 ~ 6366151 (+) | True | CI01000059_06362860_06365608 |
| CI01000059_06475252_06490373.mRNA | mRNA | downstream | 213374 | 6475007 ~ 6490464 (+) | True | CI01000059_06475252_06490373 |
| CI01000059_06495706_06517989.mRNA | mRNA | downstream | 232407 | 6494040 ~ 6518251 (+) | True | CI01000059_06495706_06517989 |
| CI01000059_06603094_06606384.mRNA | mRNA | downstream | 339841 | 6601474 ~ 6606471 (+) | True | CI01000059_06603094_06606384 |
| TU287891 | other | upstream | 1021810 | 5237759 ~ 5238233 (+) | True | G253654 |
| TU286863 | other | upstream | 3056952 | 3202739 ~ 3203091 (+) | True | G252732 |
| TU285978 | other | upstream | 4124865 | 2131492 ~ 2131636 (+) | True | G251935 |
| TU286110 | other | upstream | 4188119 | 2069478 ~ 2069578 (+) | True | G252061 |
| TU285191 | other | upstream | 4598653 | 1627766 ~ 1661390 (+) | True | G251249 |
| TU289941 | other | downstream | 1183309 | 7444942 ~ 7450195 (+) | True | G255434 |
| TU290615 | other | downstream | 2092586 | 8354219 ~ 8354873 (+) | True | G256046 |
| TU290566 | other | downstream | 2370318 | 8631951 ~ 8632104 (+) | True | G255998 |
| TU290607 | other | downstream | 2466081 | 8727714 ~ 8884826 (+) | True | G256038 |
| TU290617 | other | downstream | 3357407 | 9619040 ~ 9683623 (+) | True | G256048 |
