RNA id: TU285978



Basic Information


Item Value
RNA id TU285978
length 145
RNA type TUCP
GC content 0.39
exon number 1
gene id G251935
representative True

Chromosome Information


Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 2131492 ~ 2131636 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CACCTCCTCCTTTTATCTCCAACCTGGTGGTTCAGGTTGGTCTCACCTTATTTCGGAAACACGGAAGAACAGAAGTCACAGCAGGAACAGCGTGCAGGTGTGAAAACTGATTCCCACCAAACAAATCACCCTCAGGCCTCTGCCGGGATATTGAAGAAAGAACTGATATTTGGATCCAATAATGTTTCAAGAGTTTTAACAGACTGAAACAGAAACCGAGGCCCTTGATTATTCATTTTTGCCCATTTCTTCCAGCCTGACACCATGAATATCTCACTTGAGAACCCCTATGGTGATGTCACCATCCCTCGTGCAAAGTTGCGGGATCAGGGAGACTCCAGCACCATCATCATGAACCCAATGACCTTAGAGAGCACCTACAACAACCGTAACTCCTTAAACCCCTACAACAGCTTCAAAAATCCAGGGGAGAACAACACCTCAGGTGTTCCGGTTTACGGAGAGGCCAGAAACGGCAGCCAGAACCCCCCTCCTTACAACAACCAGCCAGGATACACTGTAAAAGAAAGCGACGAGCAGGTGGGACGATGCTACGCCTGTTGTTGCCGCTGCCGGAGAAGGAAGTGAGACCAGATGATGTACCCTGTGGGTTTACAGTTTGGAACCATCATTCAGCCTCCCAAATTTTGAAAGCCAAATGCCATACAGTTCTAAAATGACTGGATTTTAGGACTGCTTTAGCTATTACATAACCTGGAGATCATACAAAACAAGAGCTGACCTTCTGTGACTACACTGAAACCTATTATATTAAATATTTACTTTTGGATTATGTCAAACAGTGCTTTGTTCTGCTGGATTGCTTTTATTGGACCGCTTTGAAGTTGCCTTACCTTTGTGTGCCTCATACAATGGCATACTTAGATACTCCCCTTCAGCGTCACCCAGTTGTTCTTGTACACTTACTTACTTATATTTGAATAATATTATTGTTAATGGAGTGTTTCTATAAATTATAATGACGCTGAACTGGTTTTAGTGGTGCACACAGAGGTGAGGCTCTCTTCACAATATGTCCCGGTGGGCTTCTCCAAGTTTCATTTGGTTTTTGAGCCACACCCTGACATGCCGTCAGACACAGGTCAGTGAAACTCGAGGAAGAACCCTCATTCTTTTTCTAAAGAATATATAAAAGGACACTGTCAGCTCTTCCTGTAGAATAAGTGTTGTGGCATCCGAGTTTCTATTGAACAAGCTTTTCTGGTTGCTGTAGACATACTGCTGACGCATTGTCTATTGGTAAATCTGCCAAAGAGACTGTTGAATGTAAGATAAAACATTTATAGTACTGATATTATTTTATTATAAGCAATATTATGGTAGTTACATTTAATATGATGGGGCGTGGACAGTTTTTTTTTGGCCATAAGACTGTGAGCCTGACTACTGTAATGTAAAATATGCCAAACAAAACATTTTGGATTGTCTGTATTATATGTTAGGCACGATGATCAATATATTTTTTTGATACATAAAATCACTTTTGTCTCCATAAAGAACTGTCTTTTTACTTAAGAACTTCTCAATGTTTCTAACAAGGTGACTCAGTCTGTGTGACGACAAATTCTTTCAGCTGAGTAAAGGGAGTATATTAGCAGCTGAACCGGTTTGGGACGCAGTGCCCTTAGAGCGAGTTCCTGGAACAACAGATTTACAGTCACATGGAGTCTAGACCAGCCGGTTTACAGATGTACAGAAACTTTGTTACCTGAAATCTGCAGCACGACACCTACTGTGGATAGGGTTATTAATACTGTCCACTATTGATATACAACATTAGATTTCTTTAGATTTATTTTCAGTATAGTGTCCGAGAGTTCATGGAAAGTAAACCAAAATTTTGCAAAGACAAAGTTTAGGAGAGACATTTGAAACATTTCAATCACAAGGAAATGATGGATTCAGAGGGAAACACTTACTGTAATAGTTAAAAACAGTTAATATGCTAGTAAATTGGTACTGGTAGACTTCATTATCTATTTTCTTGAGACATTGCTTAATATTTCGTGTAAGTAATTTTATGTTTGCTATCAAGATGTTCCCATAAATGAAACAATACTACACAGTACGCACATAATGGATTGATCCCTTTGTAAAATTTATAGTATACTTTTACAAGGTTATTGTGTAAAAATCAAATTCATACAGAATCTCATTCAAATAGCTTTTGTTGCATTTGTCTTTTTTTTTTTTTTTGTTGACAGTGGTGGCTGCTATGAAGTTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU286126 lncRNA upstream 6199 2125089 ~ 2125293 (+) True G252075
TU286125 lncRNA upstream 7195 2123964 ~ 2124297 (+) True G252074
TU286123 lncRNA upstream 8284 2122734 ~ 2123208 (+) True G252072
TU286118 lncRNA upstream 19267 2111980 ~ 2112225 (+) True G252069
TU286116 lncRNA upstream 20073 2111043 ~ 2111419 (+) True G252067
TU286007 lncRNA downstream 14539 2149717 ~ 2151818 (+) True G251963
TU285987 lncRNA downstream 37107 2172285 ~ 2173882 (+) True G251943
TU285991 lncRNA downstream 39154 2174332 ~ 2174677 (+) True G251947
TU286155 lncRNA downstream 148854 2284032 ~ 2284241 (+) True G252099
TU286198 lncRNA downstream 240247 2375425 ~ 2375674 (+) True G252138
CI01000059_02100931_02106420.mRNA mRNA upstream 25072 2100931 ~ 2106420 (+) True CI01000059_02100931_02106420
CI01000059_02087382_02094472.mRNA mRNA upstream 35756 2087335 ~ 2095736 (+) True CI01000059_02087382_02094472
CI01000059_02068570_02070710.mRNA mRNA upstream 60656 2068570 ~ 2070836 (+) False CI01000059_02068570_02070710
CI01000059_01985427_01999889.mRNA mRNA upstream 131554 1985427 ~ 1999938 (+) True CI01000059_01985427_01999889
CI01000059_01893067_01914170.mRNA mRNA upstream 217246 1893067 ~ 1914246 (+) True CI01000059_01893067_01914170
CI01000059_02199027_02200947.mRNA mRNA downstream 63785 2198963 ~ 2201185 (+) True CI01000059_02199027_02200947
CI01000059_02213426_02223792.mRNA mRNA downstream 78248 2213426 ~ 2224014 (+) True CI01000059_02213426_02223792
CI01000059_02246538_02247644.mRNA mRNA downstream 111360 2246538 ~ 2248128 (+) True CI01000059_02246538_02247644
CI01000059_02252357_02259906.mRNA mRNA downstream 116941 2252119 ~ 2260117 (+) True CI01000059_02252357_02259906
CI01000059_02262610_02274923.mRNA mRNA downstream 127089 2262267 ~ 2275181 (+) True CI01000059_02262610_02274923
TU286110 other upstream 59568 2069478 ~ 2069578 (+) True G252061
TU285191 other upstream 470102 1627766 ~ 1661390 (+) True G251249
TU284915 other upstream 1064135 1064869 ~ 1067357 (+) True G251017
TU284955 other upstream 1152274 978741 ~ 979218 (+) False G251046
TU286863 other downstream 1067561 3202739 ~ 3203091 (+) True G252732
TU287891 other downstream 3102581 5237759 ~ 5238233 (+) True G253654
TU289048 other downstream 4124865 6260043 ~ 6261633 (+) True G254692
TU289941 other downstream 5309764 7444942 ~ 7450195 (+) True G255434
TU290615 other downstream 6219041 8354219 ~ 8354873 (+) True G256046

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059566 True 3165 mRNA 0.37 2 NC_007116.7 57480014 ~ 57485614 (+)