CI01000059_01893067_01914170


Basic Information

Item Value
gene id CI01000059_01893067_01914170
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 1893067 ~ 1914246 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_01893067_01914170.mRNA
ATGCCTATAGTCAAAATTCCTATCAAACATTATTTAGGAATAGTTTCTCAGTCTCAACAAGAGGATTTCAAAAAACGCTTCAGAAAAAAGGCCGAAGAAAGTGATACTGCAAGAAATACCACCAGTGTCAGAAGAAACCCATTTGAAACAACAGAAGGCTTCATTGATAAATACAATCAGTCACAAGGCTCAAAGGAGCAGGAAAAGTATGAAAATCTTGCAGATGTGTTTCTCAGTCGATGCAAGCGTCGTGCTGGATTTACATCTGTTGGTGAAGGTAAACATGTTGATCTCCCCGGAGCCTGGACGCAGCTTCTCCTGCTGAGCTTGTGCAATGGAAAAGTTAGAAATGATTCACTGGATGTCCTGGTTGTGTCATTGGACCACGCACCCATTCATGCAGATCAGATCCCTGTGCTGTTCCACCTGGCAGAGTCAATCCACTATTTCCTGTGCTCTGACACAACTCTGTTGGACCCTCCAAGTTCTTATACGACGAAGATGCTGCAGTTCTCTGTGGAAGCACAGAAGCGTGGTGTTAACCAGGTCTTAAGGCAGTGCCTTCTTGGCTATCACTGTGTGCAAAACAATGGCACTCGGCTCTCTCAAGTGATCAAACAGCTTATGTTGCTGAGAGATAAACTTCAACAAGACAACTGGGTCGACTGTGGGTTAGGGCTGATGATTCTGGGAGAGGCCGCCAAATCTAGCATGCTGTGCCTTCAGACCCTTATGAACCTTCACATGGTCCAAACACAAGAAAGCACTCAGGAAATTACATCACAAAAAGCATCCTGGCCGTGGCAGTTGGAGCACATATATTGCTCCGTTTTGATTGACATTTGCCAGAACAGCTACTATGCTGAAATGAAGAAAACAGCCCTCATTGGGCAGTCAAACTCTTCTCCGTGCAGACGTTCTGGAGGACTTGTAACTTTGCTCAAACAATCACACGAAGACAAATGGAGGCTGCGGTACAGTGTGGTTCAGGGTTTGGCACAGATCAGCCGGAGGATCACGCTTCCGGAGAGCCTGAGGAACACTGCCTGGTTAACACTACAGAAACATCTGAACCAGGAGACAGACCTCCGCATAATCAATGCTGTGAGAATCATTGAGGGTAAGCGGATCACTGGGCGGCTGGCACACACTCTTTCCCAGATCTGGCCTCCAGTTCAGCTCACTACTCATTCTGCAAACCACCGGCACAGAATAAAAACCACCAAAACCAGGAAAGAGGCAGTTTCCACAGCCAGGGCTGGAGAAGGATGCCCTGAACCACATCAGACTATTACTAAAGATGATCACAAGACACCAAGTACTTCATTTCATCTTTTTCATTTCAAATATGTGGCAAATTTGATCAGACAGGGCAAACATGGAGTTTCTCATCTGGACCTGAGAACCAGGACTGATATTGATCTGATTAAAGTTGTGGAAGATCAATGGCAGAGGGAATTGAAAATAATGTTGGAAAAAGAGGAAGAGATTGAAAAGACAGTGCTGGAAAAAAGAAAGCAAGAGGACGAGGAGAAGGTAATGAAGAAACGCATGGAAAAGGTCAAAAAGAACACAAAACCTTACGAGTTACCATGAACCAATATATGATTTTACCTTTAAGTCTATAAAGCACTGAGAAATAGTGACAAACACATCCTTAAAACTGAAACAA

Function

NR:

description
LOC793774 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_01893067_01914170.mRNA True 1672 mRNA 0.44 11 1893067 1914246

Neighbor

gene id symbol gene type direction distance location
CI01000059_01831592_01831849 NA coding upstream 59473 1830892 ~ 1833594 (+)
CI01000059_01443666_01454016 AATF coding upstream 439051 1443666 ~ 1454016 (+)
CI01000059_01437393_01441869 LHX1B, LHX1 coding upstream 449786 1436230 ~ 1443281 (+)
CI01000059_01351954_01355411 MRM1 coding upstream 537181 1351954 ~ 1355886 (+)
CI01000059_01293199_01294944 FZD9B, FZD9 coding upstream 597768 1292871 ~ 1295299 (+)
CI01000059_01985427_01999889 PJA2 coding downstream 71181 1985427 ~ 1999938 (+)
CI01000059_02068570_02070710 NA coding downstream 154324 2068544 ~ 2071924 (+)
CI01000059_02087382_02094472 SLC31A1 coding downstream 173089 2087335 ~ 2095736 (+)
CI01000059_02100931_02106420 PRPF4 coding downstream 186685 2100931 ~ 2106420 (+)
CI01000059_02133197_02134625 NA coding downstream 218757 2133003 ~ 2135347 (+)
G251931 NA non-coding upstream 10354 1880408 ~ 1882713 (+)
G251836 NA non-coding upstream 114771 1778059 ~ 1778296 (+)
G251830 NA non-coding upstream 125167 1767667 ~ 1767900 (+)
G251788 NA non-coding upstream 191765 1700861 ~ 1701302 (+)
G251774 NA non-coding upstream 209463 1683367 ~ 1683604 (+)
G251939 NA non-coding downstream 15 1914261 ~ 1917485 (+)
G251941 NA non-coding downstream 94292 2008538 ~ 2010679 (+)
G252058 NA non-coding downstream 143614 2057860 ~ 2058137 (+)
G252067 NA non-coding downstream 196797 2111043 ~ 2111419 (+)
G252069 NA non-coding downstream 197734 2111980 ~ 2112225 (+)
G251249 NA other upstream 231677 1627766 ~ 1661390 (+)
G251017 NA other upstream 825710 1056252 ~ 1067357 (+)
G251046 NA other upstream 913849 978741 ~ 979218 (+)
G252732 NA other downstream 1288493 3202739 ~ 3203091 (+)
G253654 NA other downstream 3323513 5237759 ~ 5238233 (+)
G254692 NA other downstream 4345797 6260043 ~ 6261633 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030495 tmem232 coding NC_007116.7 CM002889.2 56965177 ~ 56997795 (+)