G251941


Basic Information

Item Value
gene id G251941
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 2008538 ~ 2010679 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU285985
ACAATGAGCAGACATTGTTATAGTTGAATGTCCATCAGAGAGGTGTTATGAGCAAACAGAAACAGATGAAAGAAAACTACATGGAAAAAAAAAGAATCAAGCTTTTAAATGTCAACCATTTATCTTGTGATATTTCCTCTTTCAGCGGGCAGGGGTGAAAATCAAACGTCCAGTGTTGCTTTTCTACTTTTGTTCTAGAATCAATTCAAGACAGTTCTGAGTTGATCATTACCTGAAACAACAATTTGCTGTTTTATATTATAGGGGATCATTTTAAAACACAAAAAGGCCAAAAGTGCAATCAACATATAAAATGTTCCATCACAGAATAAATAGTCCAGCACAGAGCAGAAGATATCAGAAGGAAGAACTGCCAATCTGACTGACAAAAGAAACATTTGCTTGCTGTTAAGTACTTTGAAAAATGAACTCAAGTTATGAATGATTTATTAGAGTATTGCTGACAAGCCATTTTTTTCTGATGGAAGTTTACATGATCACTATGTGCAAGTCAGACATGGGAAAGGGAATTCTAATGTCTCTGAATAACACAAATTTCAATATAATGTGAGACAAAATACTGGCGTTTGCTTTAATACACTGACAGAATTATAGTGAATGGTACAAAATAGCAAAAGATTAAAATGCTATAATATTACAGTATTTCAAATAAATAAAAAGAATCAAACAACACACTATTGGGATAATTGCTTTGACGTAAAAAAAAAAAAAAAAAAAAAAAAAATCAGAAGAGCTCACTCACCAGTAGTTTAATTGATGTAAGCTCAGCTTCACCAAAAAAAAATGTTTTTGATCTGAACCCACTGGCGAATCATGCAAGAATACGAATTCAAACTGTATTATACAGTAGCTTTACGGTTAAATTGTCACCACTTCTGCATGATTGGCACATGCATTTTATTCCATGTCAAACATGTTGACTTTTGGCTGTATTAGTGACGGCAACAACTTGAAGAGGAAAAACCAAAGATCTTGCAAACTAAAAAAGAAACAGTCGATTCTATGGGACCCTCTTAACATATTCCAAATGTGCAAATATTAGAGCAGTATTGATTCTGGGTCTTCATCGCTACTATTACAGCTGAACTTTGAGGCATATTCCTGACAGACATCCACATTCTAATAACATCAGTTTTGCAGTGGAAAAAACAAACACCTACAAAATTACATTACTGAATCTACAAAAAAGTATTTACAAAATACAAAAGGAATGCTTTTATAGAGTAAACCTTGAAGAAACCACTATTCCATTTTTGTGGAAATGGAATAACAAATTTATGTGACTCTGGAACAAGAAGTTGCTGGTAAAACACATCTGATCGGTCCACACAGATGCTCACGTGGAGCTTGGGTACATAAACTTGAAGGAAAAAAATGGCACCTGACAGAAACTTGGGAAAGTCTTAATACAAAACACCATTGTCTAACCAAACCTGTAATACTTGTGGAGGTAAATACATATCTAATAGAACTCAAGGGTTGTTTGCATGAGAAAACCTGATTGTAAAATAGCACATGTTGCACAGGAATAAGAACATCACAATCCAAGACAATGGCATGTAAACAAATAAACATGCTTGTGACTGGCTTTGGTTGCTGGTTACCAAAAAAAAAAACACAGAGATCCATAAACAGAGATCCCAAAAGGACAAACCACAGTCAGTTTTGGACAAAGCTTTTGATGATGTCTAATATGCCACATGGCAACAATGTAAATATTAAAGGAATAGTTGAATGAAAAATGAAAATTGTCATCTACTAATTTCCATCTGTTCAAAACCGTATGATTTTTTTTTTGTTCCAAGAATGTCCAAGGCAAGCTGCTTTTTTTTCCCCCCCATACAATGAAAGTGAATGGGGACTGGGACTGTCAAGCTGCAAAAAGGCACCATAAAAGTATCCAAAAATTCCCTATAATCTGTGTGGCATAACAGACTAAAGAAGCAAGTTATTCGCTAAAAAATTCGTTCAAATATCACTGGTATTTCTACATATTTAAACTTATTGCATCATAATCGCTCATGTAACGTAACAATGAATAACATTTTGGCATCACTTAAAGGTATAGTTCACCCAAAAATGAAAATGATCCTGTGATTTACTCACGCTCAAGCCATCCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU285985 True 2142 lncRNA 0.34 1 2008538 2010679

Neighbor

gene id symbol gene type direction distance location
CI01000059_01985427_01999889 PJA2 coding upstream 8600 1985427 ~ 1999938 (+)
CI01000059_01893067_01914170 NA coding upstream 94292 1893067 ~ 1914246 (+)
CI01000059_01831592_01831849 NA coding upstream 174944 1830892 ~ 1833594 (+)
CI01000059_01443666_01454016 AATF coding upstream 554522 1443666 ~ 1454016 (+)
CI01000059_01437393_01441869 LHX1B, LHX1 coding upstream 565257 1436230 ~ 1443281 (+)
CI01000059_02068570_02070710 NA coding downstream 57891 2068544 ~ 2071924 (+)
CI01000059_02087382_02094472 SLC31A1 coding downstream 76656 2087335 ~ 2095736 (+)
CI01000059_02100931_02106420 PRPF4 coding downstream 90252 2100931 ~ 2106420 (+)
CI01000059_02133197_02134625 NA coding downstream 122324 2133003 ~ 2135347 (+)
CI01000059_02199027_02200947 CRYAB, CRYABB coding downstream 188284 2198963 ~ 2201185 (+)
G251939 NA non-coding upstream 91053 1914261 ~ 1917485 (+)
G251999 NA non-coding upstream 101509 1906432 ~ 1907029 (+)
G251931 NA non-coding upstream 125825 1880408 ~ 1882713 (+)
G251836 NA non-coding upstream 230242 1778059 ~ 1778296 (+)
G251830 NA non-coding upstream 240638 1767667 ~ 1767900 (+)
G252058 NA non-coding downstream 47181 2057860 ~ 2058137 (+)
G252067 NA non-coding downstream 100364 2111043 ~ 2111419 (+)
G252069 NA non-coding downstream 101301 2111980 ~ 2112225 (+)
G252072 NA non-coding downstream 112055 2122734 ~ 2123208 (+)
G252074 NA non-coding downstream 113285 2123964 ~ 2124297 (+)
G251249 NA other upstream 347148 1627766 ~ 1661390 (+)
G251017 NA other upstream 941181 1056252 ~ 1067357 (+)
G251046 NA other upstream 1029320 978741 ~ 979218 (+)
G252732 NA other downstream 1192060 3202739 ~ 3203091 (+)
G253654 NA other downstream 3227080 5237759 ~ 5238233 (+)
G254692 NA other downstream 4249364 6260043 ~ 6261633 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030498 NA non-coding NC_007116.7 CM002889.2 57238718 ~ 57241553 (+)
tiger barb (Puntius tetrazona) G38892 NA non-coding NC_056703.1 CM032072.1 23666841 ~ 23669869 (-)