G251939


Basic Information

Item Value
gene id G251939
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 1914261 ~ 1917485 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU285982
AATTTTTATTTTTCTGTAACATTCCTTTCAAATGACAGACAGACAGAGACAGGCAGACATTCGTTGGCTAAAATTGTAAATGGCAACACTGGTAAAAAGATGCATACTCTTCAGATAGTCACCACACTGTTCAAGATTAAAAATAGAGGAATATTCTCACAGGGTCGGAAAGCATTGGCCTGCTTTCATTATCCTGATTGACTACAGTCACAGACCAATTTGGTCATACAAGTGTGAATTAAGCAGCTAGTTGGAATACAGTGATCACAGCACTTCTGACTGACCAACAGAACGACACACCAGTCAATATTTTCATAAAAGGAAAAAGAAAAACATGCTGAATCAACAAAAAAAATCACAGTAGCAAGTCAACAAATGATCATCTTTCACACTCAAGACAAGCGGCCAACTCTTATTGCCAGCCTGAAACAAAACACCCCAAAAAAGATACCCAGAGTATAAGACAGAAAATGGACTCCCTTTAAGAATAAACATCACAGAATGAAGGAAAATGCATTTGTGAAAAACATTCATATCATATATCACAATGTGTGGCAAATCTACATATCAGAAAGAGCTTTAAGAACTTTGCCAGGTAAAATTGGAGAATTACTGGCAGGCAATTTCTGACTACAGGAAGTCTGTGATTTAAGGTCTAGAAAAATAGATCATTGTTGCATAAGACAAAAATGTACATTTGCATAGTTTGATTGTATAATAAATCGAGCTTTTCCATTTTTAAACTTCAACACAATCACATGAAGTTTATAATCCATAGTAACCATGACACCATTTTATGATCAAGCACCCCTTCCAACTCAACCATTGCAAGAATTTATATTATTTATGCATGTTTATATTCATATAGCCTAATATATTAAATAAAAAAAAAAAATATTCTCTGATAATTATCATCTCTGGGAACAATGGAATTAAATCTTCAATACACATACTTTAGTACAAGACACCCACCCACCTTTGGTCAATTTATGTTGCTACTGAACCTATTTACAATCCTTCAGACTGAATAAAATAGACAAATTAAGAAAAAAGGGTGACCAATATATACTATCTATATATTTAGAAAAAACAAATCACTTAAGAAAGATAAGACACAACATCTGAGGCTTCTAAATTTTAAGTCACATTAAATGACCCATTTCAATGAATGTGATAAACACACGTAACTTGCAGTCATTTGCATTGATAGAAATTATCAAGGGACATTTAAAGGTGCAGCATGTAAGAATTCTAGAGGTCGCTAAAGGCCTATTCAAAACAAAGGCGTAGCTTAATGACGCCAAGTTTGAGCGCGGAATCTTGGGACATGTGGTCTTCACCTCAATGGACGGTGCAAAAGAATAGGGATAGGACTCTGAAAGAAATCATGTTCATGGATGCGATTATTAACGTTATTGTAGTATGAAGCAGAGCAGGACCGAGTGTTGTGGGATCTGAACGAGGACGCTGGAGCGATTGTGCAACACGCCTCACGAGCAGCAGAACTTTTATTATGCCACAGTCGCCGGCGCCGCTTCCGCTTTTCCGGTCATGAGTATGAGGTAACACAGCTCTGTTTATCATATTAGATACATTTGAGTATGTTGAAAATGATGTTATAACGTTACTCTGTGCGTTCGCTCGGTGGCTGCTGTGAGACACTTCTTGCACACTGCAGTAAGATGGGCATCGATTTTAGAATATCATATTAAATGCTGGATGGCTTGTGTTGATAAATGGAATGCAATTAATTTTAAAACGTATTGTGTGATGGAGAAAATGCTGTGTTACTGTTACTAAAAATAAAGCTGCATCTGATTATGCTATGTTAGCTACTTGACAAAATAGTGTTTTTCTCTGAGGCATGGTAAAGCATGGTACTCGCAAAAAATCAAGAAAATTAGATTTAAACAATAAGACTAAACGTGTTGAGCTATATAACAATAATTAGTTTTCTGTCTATAAATATATCAAAACAGTTGTTCCCTTGTCTATTAAAACGTGTAATATATTCTTTGGTGTTTCCATGGTTTCTACAAAATAAAACCGGAAACCGAGGCAGACCGAGGGTTAACGCAGGTATGACGCCATTGACAAGCAACTAGAGGTTTGCATTCCCGCGGAAACCGCGGGACCCGATAAGATTTCTTGCTGCGCGGGATTAAATTTTGAATGAAAGGCGGATTGCGGTCGGTAACTATAGTGTACTTCAGGCGGGAGCAGGCGGTCTGACAATAACCCGGTCGCTCCCGAGATGCTTTGACATCAGCGCATCTGTGCTTGAACTTGAAGTGAACAAAACTTTCTGCAGTGGTGGCGTTCACACTGTCCCCAGTTCCCTGTCCTGAGAAAACTGGCAAGATATGTTCTTTGCATTAGAGGTCTGCACGACTGCATCAGAGAACATTCAACCTTTGTGATCGGATTTTAGAAGAGAGACGTTCTGAAACAGTCGTCAGTCAGCGTCATTCTGTTCTTGCGTGGATGTTAAAAAATATTTCAGTTTTCGTTTATGTAATTTTGGCTTAGCCTATAGTTTTGAGGGACATGTTGTAGGCTATTTAATTTAGCCTATTTTTTCTAAGTGATATTTAGCCTATTATTCTTTGGACATTTTTTCTCTGACATTTTTAGGGTGTTGACAGCATCATAAGACAAATAACACATAAAAATCTTGTATATGCTATGCAACATTTTATATTTGTTATCCCCAATCACTCTCTTTCTTTAGTTTAAAGTTTAAACGCGAGATTCTGGAAACGATCTAAATTTAGCGGGACCCATCGGGTTGGGAAGAAAATCACTATATGCGGATAGCAGGTGAACACAGAGTAAATTTTAGGCGGGAGCGGGTGCGTGCAGAATAGAACCTTGCGGGAGCGGGATGAAAAAAACAGTCCCGCACAGACCTCTACAAGCGTAGAGGGATAACATTTGGGATATTGTAAGTACTCAAGTGAACAAAATATATAACACTGGCCTAGTGGATTTTGGATATTTTACTGCAAAAATCTTACATGTTGCACCTTTAAAGAAAAATACGATGCCATATTACGATTTGCATACCTTTTCACAAATGTTTGATTGTGAAGATATGTTGTTTTTTAAAGACTGCAAAATTAAAACTGTCTGTCATTAATGTTTTCTATGTTAGAATTAACAGCGAATGATAAAAATGATGTTCAGTTTTAAAATTGCTCATTTTATCACATCCATTAAGAAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU285982 True 3225 lncRNA 0.37 1 1914261 1917485

Neighbor

gene id symbol gene type direction distance location
CI01000059_01893067_01914170 NA coding upstream 15 1893067 ~ 1914246 (+)
CI01000059_01831592_01831849 NA coding upstream 80667 1830892 ~ 1833594 (+)
CI01000059_01443666_01454016 AATF coding upstream 460245 1443666 ~ 1454016 (+)
CI01000059_01437393_01441869 LHX1B, LHX1 coding upstream 470980 1436230 ~ 1443281 (+)
CI01000059_01351954_01355411 MRM1 coding upstream 558375 1351954 ~ 1355886 (+)
CI01000059_01985427_01999889 PJA2 coding downstream 67942 1985427 ~ 1999938 (+)
CI01000059_02068570_02070710 NA coding downstream 151085 2068544 ~ 2071924 (+)
CI01000059_02087382_02094472 SLC31A1 coding downstream 169850 2087335 ~ 2095736 (+)
CI01000059_02100931_02106420 PRPF4 coding downstream 183446 2100931 ~ 2106420 (+)
CI01000059_02133197_02134625 NA coding downstream 215518 2133003 ~ 2135347 (+)
G251999 NA non-coding upstream 7232 1906432 ~ 1907029 (+)
G251931 NA non-coding upstream 31548 1880408 ~ 1882713 (+)
G251836 NA non-coding upstream 135965 1778059 ~ 1778296 (+)
G251830 NA non-coding upstream 146361 1767667 ~ 1767900 (+)
G251788 NA non-coding upstream 212959 1700861 ~ 1701302 (+)
G251941 NA non-coding downstream 91053 2008538 ~ 2010679 (+)
G252058 NA non-coding downstream 140375 2057860 ~ 2058137 (+)
G252067 NA non-coding downstream 193558 2111043 ~ 2111419 (+)
G252069 NA non-coding downstream 194495 2111980 ~ 2112225 (+)
G252072 NA non-coding downstream 205249 2122734 ~ 2123208 (+)
G251249 NA other upstream 252871 1627766 ~ 1661390 (+)
G251017 NA other upstream 846904 1056252 ~ 1067357 (+)
G251046 NA other upstream 935043 978741 ~ 979218 (+)
G252732 NA other downstream 1285254 3202739 ~ 3203091 (+)
G253654 NA other downstream 3320274 5237759 ~ 5238233 (+)
G254692 NA other downstream 4342558 6260043 ~ 6261633 (+)

Expression


Co-expression Network