G251017


Basic Information

Item Value
gene id G251017
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 1056252 ~ 1067357 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU284914
GAAAGGCATCTAGAAAGATCCATCTAAAATGGTAAAAATGCTTACAAACAGACGTACAAAAGCGCCAGCAAGATTTAACGGATCCCAATGTCAATGGAGTACAAACGGACAATCCATCTCATGAAGTTTTACGAATCTGAAAATCGGGTTGAGAAAACTAGCACAAAAAAAAAAAAAAAAAAAAAATTCCCCCTCAGGAATGAATCCTTTTCCCACCCTGAATATCCCCATTTTTCAAATCAAAATAGATGTTCATCCTTTAAATAAAACTGCACCGATATTAAAACTTTAAAGAACTGAACTGAATATTTACACTTCCCCCAAAAGTCTCATCATCAAGAATACAAGATAATGGAACAATAAATTCATTGGCAAAAAAAGAAAAAGAAAAATCATATATGATAACATTCTGCATGTTGCACAGACTAAGCATGCAGCTCTGGTAAGGCCAACAGCGGACATCACAGATGGGCTCCCCCTACTTACGAAACAGTACAATCAATAATGGAAAAATCGCGTGCAGAAAGAATATGTTAAAGAAATAAGAGGATCCACTTGCTTTTGAGAAAACTTTTCCCTCAAATATGTTGTTTAAAAAAATATTGTTGTTAGGAGAACTGGCAGGGAGCACATCTACCCAAGAAGCAGAGGAATGTAGGTTCTGAAAACAAGTTGAAGTGAATGGGTATGGCAGTTTGGCTTCGATCTCCACCCTCTAGAAGAACCGACCAGAGTACTGCTTCACGCTGTTCTGTAGTAGATACTGGGCATTCTGAATCTGGTCCTGTGTGCCTGTGATGGTAATAATCCGGTCCTCTGAGCCCTCCAGAGGCTCATCGATTTTGATAGAAGCTCCTGACTCATGACGGATCTGCTTGATCCTCTGTCCGCCTTTCCCAATGATTGAGCCGGCCAGCTAGAACAAGAGTTGGGCAAAGCTTTAGTAAGTACGATTCAGGGATATTATGGTATGCTAAAAACAAATGATTTGAAATATCTGTTAAATTAAATAAATATTTGCCATTCCACTAAAAACCAAGCTAAAAACTGGTTGAAAACTAACTGAAACAACAACAATAAATAGTTATTTTTTAAAAGGCAGTATTCTGGGTGTGAATTAGGGCTGG
>TU284911
ATGGGGTTGTGGAGTGCAGGAATATGTGATAGACTTGCCTGTTCTGTAGTAGATACTGGGCATTCTGAATCTGGTCCTGTGTGCCTGTGATGGTAATAATCCGGTCCTCTGAGCCCTCCAGAGGCTCATCGATTTTGATAGAAGCTCCTGACTCATGACGGATCTGCTTGATCCTCTGTCCGCCTTTCCCAATGATTGAGCCGGCCAGATCTTTAGGGATGGTCACTTGTGTTGTAATAACAGGCCCACCAATGTCGCTGTAAGAACCTCGACCACCATATCCACCTCCACTCATGCTCTCGTAGCGGTCTCCAGGTCGCCCCCTTCGGTCATTTGGTCTGTCGTCCATATTGCTGTGATAGCTCTGGTGGGAAAATCGATCACCTCCTCCTCTAGGCGGTGGTGGTGGGGGCAGAGGCAGATTTCGGGCCCTACTGCCCCCACGTCCTCCTCTCCCTGGTGGGGGTGGAGGTGGTCCGCGGCGTGGGCTCATATCATCATAATCTCTTCTGGAAGGGGGCATGGGACGACCACCACGGCCAGGAGGCATGCGATCAAACCCTCCCCGGCCTCGCATCGGGAACCCACCCATAGGCCGTCGCCCTCTCTCTTCATACATCATGGTAAAGCCGCCATAGTCATATGTCTCATCATAAAAGTTTGGGTCATAGGGCTGTGCTCGACCTTTAAT
>TU284912
ATGGGGTTGTGGAGTGCAGGAATATGTGATAGACTTGCCTGTTCTGTAGTAGATACTGGGCATTCTGAATCTGGTCCTGTGTGCCTGTGATGGTAATAATCCGGTCCTCTGAGCCCTCCAGAGGCTCATCGATTTTGATAGAAGCTCCTGACTCATGACGGATCTGCTTGATCCTCTGTCCGCCTTTCCCAATGATTGAGCCGGCCAGATCTTTAGGGATGGTCACTTGTGTTGTAATAACAGGCCCACCAATGTCGCTGTAAGAACCTCGACCACCAGATTGGAAGGGCTCCCAAGAAGAATTATTGTCATATCCACCTCCACTCATGCTCTCGTAGCGGTCTCCAGGTCGCCCCCTTCGGTCACTGTTTGGTCTGTCGTCCATATTGCTGTGATAGCTCTGGTGGGAAAATCGATCACCTCCTCCTCTAGGCGGTGGTGGTGGGGGCAGAGGCAGATTTCGGGCCCTACTGCCCCCACGTCCTCCTCTCCCTGGTGGGGGTGGAGGTGGTCCGCGGCGTGGGCTCATATCATCATAATCTCTTCTGGAAGGGGGCATGGGACGACCACCACGGCCAGGAGGCATGCGATCAAACCCTCCCCGGCCTCGCATCGGGAACCCACCCATAGGCCGTCGCCCTCTCTCTTCATACATCATGGTAAAGCCGCCATAGTCATATGTCTCATCATAAAAGTTTGGGTCATAGGGCTGTGCTCGACCTTTAAT
>TU284915
TTGGGGTGAACTATCCCTTTTAAATTGGTTTCAGGTCACTGCTTCACCACACACCTAACACTCCTTACCACTGTACAATACTTATAAGGCCTGGGTTCAAGGGGCATATTACTTTTTAAAAACTGTGGCAACAGCAATATGACGTAAGATACTAGGGATCAATAAATCATTAAACATTTTCATTGCATTGTGACATTTTCATGACAATTAAGCACAATTACCCTAATTTTCATTTACAAATTTTTCACAATATTTAATTCACTGCATTACAATTTCTTTTAAATATAATTACTATATTACGGTAGTGAGCCCACTGAACAATGAAAATGGAAGGAATAAGCTATGGTATTAGGAATCAAAGGAGGAAAATGTATTAGTTTGTCATGAATTTGCCAGAATGCCAAAAACCTTAATAGTTCTTAAACAGCCTTTTTTATTGCAAAATAGAATTAATGTATTATTAAAACAGCAATTTATAACTATTCTAAAGAATTTATTACATAATTGATATTATAGACGATTGATAGATCATTGATAAAATTATATTATAGAAACAAGACCTGGATGCATTTTTTTGGTCCAGCTGAGCATATTGGCTATATTACAGCAGCTTCGAATGTACCTCATCCAATTAGAGTCTAAACTATCAGTTAGTACAGCAGAATTCAACATGCATGTTCTGATCCTCTATGTGGACAACGACAGGCTTGCCATCTTCCAAAATGCTCAACTCACTCAGAGCCCAAAGTTCATTGGCGAGTGTGATGGCTTTCACCTACGTATTTAACTGCTCCTTGGTAACCAAGGCAACAAGTGATTCAAAAATCTGTTGCCAAGCAACAGCAGGCCAAACCAGTGCACTAGGCATAAGAGCTTCACATATGCATCTATTACACTGTCACTTCAGAGAGAAAGAACAAGCTATTCCACTTTATTCTGAAAGTGCCCATTAATGAAAGGAAAAAGACTTTCCTTCACAATTATAGATGATCATCAAGTAATGAGTCTCAGTATATGTTGCAAAAATACAAATTCACATGCAAATTTTTATTTATCCTCACCATGCTCTCGTAGCGGTCTCCAGGTCGCCCCCTTCGGTCACTGTTTGGTCTGTCGTCCATATTGCTGTGATAGCTCTGGTGGGAAAATCGATCACCTCCTCCTCTAGGCGGTGGTGGTGGGGGCAGAGGCAGATTTCGGGCCCTACTGCCCCCACGTCCTCCTCTCCCTGGTGGGGGTGGAGGTGGTCCGCGGCGTGGGCTCATATCATCATAATCTCTTCTGGAAGGGGGCATGGGACGACCACCACGGCCAGGAGGCATGCGATCAAACCCTCCCCGGCCTCGCATCGGGAACCCACCCATAGGCCGTCGCCCTCTCTCTTCATACATCATGGTAAAGCCGCCATAGTCATATGTCTCATCATAAAAGTTTGGGTCATAGGGCTGTGCTCGACCTTTAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU284914 False 1127 lncRNA 0.38 2 1056252 1062858
TU284911 False 691 lncRNA 0.55 6 1062440 1067357
TU284912 False 727 lncRNA 0.54 7 1062440 1067357
TU284915 True 1463 TUCP 0.41 3 1064869 1067357

Neighbor

gene id symbol gene type direction distance location
CI01000059_00944348_00984424 PCSK5A coding upstream 71378 944348 ~ 984874 (+)
CI01000059_00933745_00937663 ANXA1C coding upstream 118502 933448 ~ 937750 (+)
CI01000059_00920512_00932905 NA coding upstream 123019 920274 ~ 933233 (+)
CI01000059_00892927_00916862 TMC2A, TMC1, TMC2 coding upstream 138027 892927 ~ 918225 (+)
CI01000059_00855742_00857391 NA coding upstream 198861 855574 ~ 857391 (+)
CI01000059_01080401_01106181 NTRK2B coding downstream 12478 1079835 ~ 1106239 (+)
CI01000059_01237745_01242859 TMEM150A coding downstream 170388 1237745 ~ 1243197 (+)
CI01000059_01257411_01265603 NA coding downstream 189236 1256593 ~ 1266285 (+)
CI01000059_01293199_01294944 FZD9B, FZD9 coding downstream 225514 1292871 ~ 1295299 (+)
CI01000059_01351954_01355411 MRM1 coding downstream 284597 1351954 ~ 1355886 (+)
G251063 NA non-coding upstream 21184 1034750 ~ 1035068 (+)
G251061 NA non-coding upstream 22146 1033886 ~ 1034106 (+)
G251059 NA non-coding upstream 24263 1029858 ~ 1031989 (+)
G251057 NA non-coding upstream 31873 1024166 ~ 1024379 (+)
G251055 NA non-coding upstream 32877 1023175 ~ 1023375 (+)
G251065 NA non-coding downstream 10816 1078173 ~ 1078374 (+)
G251066 NA non-coding downstream 11876 1079233 ~ 1079456 (+)
G251021 NA non-coding downstream 41809 1109166 ~ 1112610 (+)
G251025 NA non-coding downstream 47694 1115051 ~ 1116197 (+)
G251032 NA non-coding downstream 48997 1116354 ~ 1116702 (+)
G251046 NA other upstream 77034 978741 ~ 979218 (+)
G251249 NA other downstream 560409 1627766 ~ 1661390 (+)
CI01000059_02068570_02070710 NA other downstream 1001187 2068544 ~ 2071924 (+)
CI01000059_02133197_02134625 NA other downstream 1064135 2133003 ~ 2135347 (+)
G252732 NA other downstream 2135382 3202739 ~ 3203091 (+)
G253654 NA other downstream 4170402 5237759 ~ 5238233 (+)

Expression


Co-expression Network