CI01000059_01237745_01242859 (TMEM150A)


Basic Information

Item Value
gene id CI01000059_01237745_01242859
gene name TMEM150A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 1237745 ~ 1243197 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_01237745_01242859.mRNA
ATGGCAGTAATGAACCACCATGTCTGTCCTGTTGAGAACTGGTCATACAATTTGACATGTACAGAGGAAACGGCTAAGAGGGGCTTCCCAAAGACCTGCTGCACTCTTCAAGACATCCCCCTCATTAGTAAATGTGGTTGCTATCCACCAGAGAGCTGTCTCTTCAGTTTGATAGGCAATGTTGGGGCCTTTATGGTGCGTTTTGACGTACCGTATAGCAGAGACAGCGCTGGATTACTGGATGGCTCATGTGCGTGTGGCTCTCTCAGCTGGAGCTCTGATATCGCTTGTCCTCAGTATCCTTACCAGGAGTTCATGAGTCATAATCTAAAACATGAAAATCAAATTTGGCACGCCGCAGCCATCTGTGAATGGGTCTTCACGGTGCTGGTCCTGGTGTACTACGGCACCTTCACCTATGAGTTTGGCACTGTCAACAGTGACACCATCATGGCGGCCTTAATGAAACGCAGTCAACATCACCATCCGGGGTCAGCGATCATCATGGGGGGTATCGGGAAGGGTGTTGCAATGGGATGTGGTGCCCGCAGTCTAAAGTCACCTGGTGGCAGCAGCACTTCCACACACCTCAACTGTACACCAGAAAGCATCGCCATGCTTTAGGGGTTAACCGCTATGATATTCTCTCAGACCTCAGCGTATAGACTCAGAACTCTTCTTCTGGATCACAGATTTGTGAAAAACTGGTGCAAGCAATACAGAATTACAGTAAGTTTACAGACTTGCTGATTATAATCCAACAGTAATGACCAGTTGGTCATAACTAAGGTATTTTGCATGATATTTTGCATTCATTTTTAAGATAACTCAAAGTACAGCCCCAGTAACCAGCACAGGCAATTCTTTCCCATGGTTCATGGGGCCTCTGATGGAAGTGTTTCGATTTACTCTGTTAAATCTGCAATAACTCATGTCTAAAGGTGCATTCACACTGACAGCGA

Function

symbol description
tmem150a Involved in phosphatidylinositol phosphate biosynthetic process and protein localization to plasma membrane. Is integral component of plasma membrane.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_01237745_01242859.mRNA True 962 mRNA 0.46 5 1237745 1243197

Neighbor

gene id symbol gene type direction distance location
CI01000059_01080401_01106181 NTRK2B coding upstream 131506 1079835 ~ 1106239 (+)
CI01000059_00944348_00984424 PCSK5A coding upstream 252871 944348 ~ 984874 (+)
CI01000059_00933745_00937663 ANXA1C coding upstream 299995 933448 ~ 937750 (+)
CI01000059_00920512_00932905 NA coding upstream 304512 920274 ~ 933233 (+)
CI01000059_00892927_00916862 TMC2A, TMC1, TMC2 coding upstream 319520 892927 ~ 918225 (+)
CI01000059_01257411_01265603 NA coding downstream 13396 1256593 ~ 1266285 (+)
CI01000059_01293199_01294944 FZD9B, FZD9 coding downstream 49674 1292871 ~ 1295299 (+)
CI01000059_01351954_01355411 MRM1 coding downstream 108757 1351954 ~ 1355886 (+)
CI01000059_01437393_01441869 LHX1B, LHX1 coding downstream 193033 1436230 ~ 1443281 (+)
CI01000059_01443666_01454016 AATF coding downstream 200469 1443666 ~ 1454016 (+)
G251104 NA non-coding upstream 10708 1226809 ~ 1227037 (+)
G251027 NA non-coding upstream 46484 1131194 ~ 1191261 (+)
G251091 NA non-coding upstream 50108 1186918 ~ 1187637 (+)
G251018 NA non-coding upstream 95796 1122153 ~ 1141949 (+)
G251032 NA non-coding upstream 121043 1116354 ~ 1116702 (+)
G251108 NA non-coding downstream 7152 1250349 ~ 1250668 (+)
G251122 NA non-coding downstream 39126 1282323 ~ 1282747 (+)
G251123 NA non-coding downstream 42319 1285516 ~ 1285730 (+)
G251144 NA non-coding downstream 98358 1341555 ~ 1342493 (+)
G251197 NA non-coding downstream 174420 1417617 ~ 1417850 (+)
G251017 NA other upstream 170388 1056252 ~ 1067357 (+)
G251046 NA other upstream 258527 978741 ~ 979218 (+)
G251249 NA other downstream 384569 1627766 ~ 1661390 (+)
CI01000059_02068570_02070710 NA other downstream 825347 2068544 ~ 2071924 (+)
CI01000059_02133197_02134625 NA other downstream 888295 2133003 ~ 2135347 (+)
G252732 NA other downstream 1959542 3202739 ~ 3203091 (+)
G253654 NA other downstream 3994562 5237759 ~ 5238233 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location