CI01000059_00944348_00984424 (PCSK5A)


Basic Information

Item Value
gene id CI01000059_00944348_00984424
gene name PCSK5A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 944348 ~ 984874 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_00944348_00984424.mRNA
ATGACACCAACAGCACTTTTTCCATATGCAATTTTTCTTGGGATTGCACTCCAATGTGTCCAGACGAGATTATACACAAACCGTTGGGCGGTTAAAATAACTGGAGGTCCTGATGCTGCTGATCTTATTGCAGACAAATATGGATTTGTGAATATGGGCCAGATAGGTGGGCTAGTGGACCATTACCAGTTCCAGCACAGTGGAACCATCAAAAGGTCCAGTATTAATAGCAAAGGGAACCACAGTCTCATTGCCATGGACACCAAGCATGTTATGTATACAGTAGAACATCATAAATATGTTCCGATGCCAAAGGTGGAGTGGATCCAACAACAGATGGTTCAGAAGAGAGTAAAGAGAACCGACACAATGGACCAAACCCACGCGACCAGCTTCAATGACCCCAAATGGGACAGCATGTGGTATATTCACTGTGATCACAACTGCTTGACTGACATGAATATTCAGGCCGCCTGGCGCAGGGGCTACACTGGGAAAGGGGTTGTGGTCTCTATACTGGATGATGGTATAGAAAGACAGCATCCAGACCTAAAACAAAACTATGATGCACGAGCCAGTTATGATGTTAATGGGAATGATCCTGATCCAACACCACGTTATGATGCCACCAATGAAAACAAACATGGAACAAGATGTGCTGGTGTGGTGGCTGCCTCTGCAAACAATTCCCTCTGCATTGTCGGAATTGCCTACAATGCAAAAATTGGTGGTGTGCGTATGTTGGATGGCGATATGACTGATATGGTGGAAGCCCAGTCACTGAGTCTGAGGCAGCAGTATATTGATATCTACAGCTCCAGCTGGGGTCCAGATGATGATGGCAGAACAGTAGATGGCCCCGGCCCTCTTGCCCGGCTTGCTCTGGAGACTGGCATACGCAAAGGCAGAAAGGGCCGTGGTTCCATTTTTGTGTGGGCATCAGGAAATGGTGGGCAGAGTCAAGACTACTGCTCATGTGACGGTTACACCAACAGCATTTACACCATCTCAGTAGGCAGCACCACTCAGAGTGGGAAAAAGCCGTGGTACCTGGAAGAGTGCTCGTCTACTCTGGCCACCACATACAGCAGTGGAGACAGCCACAGTCTTGGTGTTGTGACAACAGATCTGAGGCAGCGTTGCACTGATGAGCACTCTGGAACTTCAGCATCGGCCCCCATGGCTGCAGGAATCATCGCCCTCACATTGGAGGCAAATCCAGCTCTGACCTGGAGGGATGTTCAGCACATCATGGTGAAAACTTCACGTCGTGGTCACCTGAGCACCTCAGACTGGCAGAGCAATGGAGCTGGATATGATGTTAGTCACCTTTATGGGTTTGGCTTGATGGATGCTGAAGCCATGGTGAAGGAAGCAGAGACCTGGAAGCAGGTGCCTCCTCAACACATATGTGAGGAAAACATAGTCCAGAATGGCAGGATCATAAGTCCAGAGAGGGTGTTGAGGTCAGTGTTCAAGTCCTCGGGCTGCTCTGCTCAGCGCCTGCAGCGAGTGGTCTATCTGGAGCACGTTATTGTACGTGTCACAATCACACATCCTCACCGTGGAGACCTGTCAATCACACTGACATCACCCTCTGGAACCAGATCTCAGCTTCTCACTAACAGACCAAATGACCACTCCAATGAGGGTTTCCTTAAGTGGGAATTCATGACGACTCACTGCTGGGGTGAAAAACCATCAGGAGACTGGATCCTGGACATCAGAGACACCCCATCTCCACGGAGAAACAGCCGACTCCAAGGAAAACTGGTAGAATGGACCCTGGTGCTTTATGGAACATCCACACATCCATACATACGACATGAACAGCCCCGCTCTGCCCAGCTGCCTTCTGAAGATGACACCACAGAGGAGTACAATGGTGGTTACTGGGGCGATAAGAAGAGGTGTAAGAAGTGTTACTCCTCCTGTAAGTCGTGTTTAGGCAGCCGCAGTGATCAGTGCACGACCTGTAAGTCTGGATACCATCTGAACGAGGAAAAGAACAACTGTGTGACCAGTTGTGAGGATGGCTACTATCTTCACCATGAGGAAAACGTGTGCAGGAAGTGTAATATTGAGAACTGTATGAAATGCACCTCGGCCTCCATTTGCACAGAGTGCTCTGAGGGCACAAGTCTAGTGGGCAACAGATGTCTGAAGAGTTGTGAGGTGGGCCGTTACTACAGTGAGCCGGAGGACTCATGTGAGCCCTGCCACCCAGCCTGTGCTACATGTGCTGCTGCAGGTCTAGAGTCATGTAATCGCTGTGCTGAAGGCTACCTGATGGAGAACTGGAGATGTGTGTCCTCCTGCAGTCAAGGTTTTTACACTATACAACCGAACTCTGACAGCACAGACACTCAGAGCACCTGTAAGAGGTGTGATGCGAGCTGTCTGGCCTGTGTCGGGCCGGGTAAAGGAAACTGCAGTGAGTGTGTAGATGGACACACACTTCAAGACGGCGTGTGTGTTCTCAGCCACAACTGTGGTGATGGGGAATATCAGGATGAGAGTGGAGAGTGTCAGTCATGTGATGTGTCCTGTCATAAATGTAAAGGTCCAAAGAGTGAGGACTGCCTCAGCTGCTCCAACACACATTGGCTGGATGAGGGGCGTTGTGTTGTCAGCTGCTCAAATGGGAAGTATCCATCCAGTGGACAGTGTCACCTCTGTGATCACACCTGTGCCCAGTGCCTTGATGCTGGTCCTGCTAACTGTACCAGCTGTGATACAGATAAGTTTGGGGTGGACCGGTACCTGTATAATGGCGAGTGTGTGGATGCGTGTCCTCAGGCTCATTTTCACACAACGCTGAAGGCATGTGAGCCATGTTCTTCACACTGCAAACTCTGCTCCTCAGCTACCCACTGCATCAAGTGTGAGGACTCCTTCTTCCTCAGTGATGGACTTTGTAATAAACTGGAGTGTGGTGAAGGGGAGGTGGAAGACCCAGAATATGATGACTGCATGTCATGTGAAGAAGGATGTGACAAGTGTGTTCTCTATAATCCCAAACACTGTCTGTCCTGCATTGATGGATATTACAAGTTTGAGGAGGGCTGCTATAAGCACTGTCCTGCCAAGACATACGCAGTGGAGGAGACCATGAGCTGTATGTCCTGTGAGCATGACTGTGTCAGCTGTGATGAAGATGAGTGCTACTGGTGTGAAGCTGACCTCTTCCTGTCAGATGGGAAGTGTGTGCAGGAATGTCCCAATGGTTTCTATGGTGATGAAGACTCTCAGGAGTGTGAGGAATGTCACTCGGACTGCAGTACATGCAGTGGGCCGGAGGACAATGACTGTGACAGCTGCAGCGATGGACTGATGCTTGATAATGGAGCTTGTGTGTCTGAACAGGATGTCTGCCCTGCACAAATGTACCTCACTGATGATGGGGAATGTGAGGCCTGTCACTCTTCATGTGAATCCTGCTGGGGGAGAATGAAGAATCAATGCAACACATGTGTCAAAGGTCGATATTTAACTGCAGATCAGATGTGTGTGGCACGATGCCCGACGGGTAGCTTTGGCAGTAAGGAGAGTGGGCACTGTGAGACTTGTCCACAAGGTTGTGCCCAGTGCCAGGACGAGCAGCTCTGCACACGTTGCCAGTCAGCACGTAAAAGCCCTCTTTATTTGCAGGCCGGCCAATGTGTGCGCAAATGCACTAGAGGGTACCCTGTGGGTCAGGTGTGTAAGAGCTGTGCATCTGGTTGTACGTCCTGTGAGAAGAATGCAACACACTGTCTGAGCTGTGAGGAGATGCTGCTGCTCCACAACCATGAGTGTGTGGTGAGCTGCCCGTCTGGACACACAGTGAGGAACGGGGAGTGTGTGCAGTGTCCAGAGAGCTGTGCTATTTGCTCTGACGAGAGCTGTACAGAGTGTAAGGAAGACTTCTTCCTGCATAAGGGTCAGTGTATAGTGATGTGTCCTGATGGATTTTTTGAGGACACGGATCAAGATGTTTGTAAACGTTGCCACATGGATTGTTTATTATGTGATGGACCTGAATCGAACAACTGTGATGCATGTTTCGACCGTGACAGCACTCTGCACAACGGAGCATGTCTAGCCCCTTGTCCCTCACATACTTACAGAGAAAGCAGGTCCGGAGAGTGCATGGTCTGTGATAGTTCCTGTCTAACCTGTTCTGGTCCTCACGACACATCCTGCACTAGCTGCTCTGAGGGCCTGGCGACGGATGCCCATGGGCGCTGCGTCACACCCACCACCTGCCCCTCACACCACTACAGCAACCAGGATGGAGAATGTCACTTGTGTCACAAGTATTGCCATGAGTGCTCCGGTCCATATCAGGACCAGTGCCTCAGCTGCTACCAGAACCACTATCTATTCAGCAAGAGTGTTGAGGATTGTGACTCATGTCACCCAGGTTATACACTCACAGAGGGCACTTGCGAGTCGCCCTGCATCACAGGAAAATACGCTAAGTCTGAGGAGCAGGGCTATAACTGTGAATCATGTGATGAATCCTGTTTGGAATGTAAAGGTCCTGGGCCTTATAACTGCACCATCTGTCCAGCACAGTTCATCCTGACAGCAGGGGGGCGCTGTCTGCCCTGCTGCACCAACACAGAACAGGAAGATAAAGCCGCAGTTCAGCAAGAGTGCTGTAACTGTACAGAGACTAGAGGTGAGTGTGTCCTAAGCACTAACTTTGCCTTCCGTAACCATGAGGAAGAAGAGTACACAGGAAACCTGCCACTCTTCATCACCGCCTCCATCCTGCTCGTCTTTGCCTTGATCGCCGTAATCATCCTCATTAAGCGTTCTCTTTCCAAACGACCCATGCCAGAGACCGCTATCCCACGTGGGTATGAAAAACTGGGCCATGGTGGAGGCAGAGACAGCTACTACAGAGGCACATCATCATCCACCTCTGCCTACGGTGGTCAGGCAAGCTCTAGTTCTGGACGTTTCCGTGAGTCACAGCTAGTGGACCTCGGTGATCAGAAGGGGAGTCGGGAAGATGACGATGAAGATGATGAAGATGAAGATATTGTGTACATGGGGCAGGACGGCACTGTGTATCGCAAATTCAGATACGGGCAACTGGGAGACGAGCAGGAAGATGAGTTAGAATATGACGACGAGAGCTACAACTACCGATAACACCACCATCTGTTTAAACAGAAATTTATTCTGCAGGGTTTATGAAAATTGTCATTTGGAATGCAAAAGCAACATTGTGTTTAAAAATTCTATTTAAAAAAAGTTCAGCAAAGTTCTGAACTCATATGTGAATAGTAATGTATTGTGTAGGATGATATAGTGACAATCACAAATTGTAGTTGAAGATTTTATGCTGTAGTGCATCCTCTCAGCTTCTTGTCTTTTTTGACCTCTTTCGTTTTTCATCTTTTATGAAGACAGCTGAGTGTTGTACTCTTTTTGTTTGTTTGTTCTACCTGTGTGAGTGACTTTTTTTGGAATGTGTGCATTGTCAGCAGTCCCTATGCAGTACTTTTGCTAGTAGCAGAAGTACAAATGAGCTGTTTTTCCACTTAGGACTTTGTCTTATGGTCATTTTTTGTTGTGAAAGTGTGTCAACTGTAAATTGTA

Function

symbol description
pcsk5a Predicted to enable serine-type endopeptidase activity. Acts upstream of or within anterior lateral line development and neuromast development. Predicted to be integral component of membrane. Predicted to be active in membrane and trans-Golgi network. Predicted to be integral component of Golgi membrane. Is expressed in several structures, including eye; lateral line system; liver; otic vesicle; and pleuroperitoneal region. Orthologous to human PCSK5 (proprotein convertase subtilisin/kexin type 5).

NR:

description
proprotein convertase subtilisin/kexin type5a

GO:

id name namespace
GO:0048899 anterior lateral line development biological_process

KEGG:

id description
K08654 PCSK5; proprotein convertase subtilisin/kexin type 5

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_00944348_00984424.mRNA True 5595 mRNA 0.49 34 944348 984874

Neighbor

gene id symbol gene type direction distance location
CI01000059_00933745_00937663 ANXA1C coding upstream 6598 933448 ~ 937750 (+)
CI01000059_00920512_00932905 NA coding upstream 11115 920274 ~ 933233 (+)
CI01000059_00892927_00916862 TMC2A, TMC1, TMC2 coding upstream 26123 892927 ~ 918225 (+)
CI01000059_00855742_00857391 NA coding upstream 86957 855574 ~ 857391 (+)
CI01000059_00691603_00693842 NA coding upstream 250274 690594 ~ 694074 (+)
CI01000059_01080401_01106181 NTRK2B coding downstream 94961 1079835 ~ 1106239 (+)
CI01000059_01237745_01242859 TMEM150A coding downstream 252871 1237745 ~ 1243197 (+)
CI01000059_01257411_01265603 NA coding downstream 271719 1256593 ~ 1266285 (+)
CI01000059_01293199_01294944 FZD9B, FZD9 coding downstream 307997 1292871 ~ 1295299 (+)
CI01000059_01351954_01355411 MRM1 coding downstream 367080 1351954 ~ 1355886 (+)
G251035 NA non-coding upstream 5254 938184 ~ 939094 (+)
G250994 NA non-coding upstream 57271 886795 ~ 887077 (+)
G250919 NA non-coding upstream 175113 725743 ~ 769235 (+)
G250917 NA non-coding upstream 224245 719026 ~ 720103 (+)
G250904 NA non-coding upstream 248181 694103 ~ 696167 (+)
G251051 NA non-coding downstream 29085 1013959 ~ 1014232 (+)
G251052 NA non-coding downstream 30418 1015292 ~ 1015574 (+)
G251055 NA non-coding downstream 38301 1023175 ~ 1023375 (+)
G251057 NA non-coding downstream 39292 1024166 ~ 1024379 (+)
G251059 NA non-coding downstream 44984 1029858 ~ 1031989 (+)
G251017 NA other downstream 79995 1056252 ~ 1067357 (+)
G251249 NA other downstream 642892 1627766 ~ 1661390 (+)
CI01000059_02068570_02070710 NA other downstream 1083670 2068544 ~ 2071924 (+)
CI01000059_02133197_02134625 NA other downstream 1146618 2133003 ~ 2135347 (+)
G252732 NA other downstream 2217865 3202739 ~ 3203091 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030477 pcsk5a coding NC_007116.7 CM002889.2 55265274 ~ 55349429 (+)