CI01000059_02100931_02106420 (PRPF4)


Basic Information

Item Value
gene id CI01000059_02100931_02106420
gene name PRPF4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000059
NCBI id null
chromosome length 10376574
location 2100931 ~ 2106420 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000059_02100931_02106420.mRNA
ATGTCGGATGAAGACGAAGCTCCAGTTGTGAAAAGGGCCAGAATCTTCTATGGAAGCCTTGAAGAAAAGGAGAAGGAGCGTCTTAGTCGTGAAGGAACATCTTTCTCTGCCAAAGATGCTGTTAAAGCCGGCATTGCGGCTGGGCATATTAATATCTCCAGTGGCGAGTCCATGGAGATGGAGGAGCGTGTGAGTGAGCGACAGGCTGAAGTGCTGGCAGAGTTTGAGCGCAGAAAAAGAGCCAGACAAATCACAGTCTCCACTGATGATGTGGAGGTCAAGGCCTGCCTCCGAGCTCTTGGCGAGCCAATCACGCTGTTTGGGGAAGGGCCTGCGGAGAGACGAGAGAGATTGAGGAACATTCTTTCAGTACTTGGTCCTGATGCCTTGAAGAAATCGAAGAAAGAGGATGAAAAAGCAAAACGCACTCAAGAAGAGTATCAGCAGACATGGTACCATGAAGGACCTTCATCTCTGAAGGAGGCACGTCTTTGGTTAGCCAAGTATTCACTGCCCAGAGCAGTGCAAAGGTTAGATGCTGCAAGGGCCCAAAAAGAGATTCCAGAGTCTACAAGAACAGTTAAACAGCAAGAGCTTCACAAGAACCTCCGGAATGTGAACAACTTCTGCAGCCAAATTGGTGATGACCGTCCAATATCTCACTGCCAGTTTAGCCCCAACTCTAAGCTGCTTGTGACTGCGTCTTGGTATGCTGGCTTGTGTAAATTGTGGAAAGTCCCAGATTGTACACTAATACGCACATTAAGAGGTCATAATACCAACGTGGGAGCGATTAGCTTTCACCCTCAAGCAACACTCACACTTGAGGAGTCGGATGTCAATATGGCCTCCTGTGCTGTGGATGGATCTGTTAAGCTGTGGAGTTTAGACAGTGATGAGCCTGTAGCAGACATTGAGGGGCACTCTATGAGGGTGGCTCGGGTGGCCTGGCATCCCTCTGGACGGTTTTTGGGTACAACTTGCTATGATAACTCATGGAGACTTTGGGATCTTGAGGTCCAAGAAGAAATTCTGCATCAGGAGGGTCATAGTAAAGGTGTCCATGACCTGCACTTCCACCCAGACGGCTCTCTGGCAGGAACTGGTGGTTTGGATTCATTTGCCCGTGTCTGGGACCTGCGGACTGGTCGTTGCATCATGTTCCTGGAGGGCCACCTCAAAGAGATTTACAGCCTTAATTTCTCACCAAATGGCTTTCATGTGGCAACAGGAAGTGGCGATAACACCTGCAAAGTGTGGGACCTTCGTCAGAGGAGGTGTATATACACAATCCCTGCCCATCAGAACCTTGTGTCCTCAGTCAAGTTCCAACCTAACGATGGGCATTATTTGCTGACTGGTGCATATGACAACACAGCAAAAGTGTGGACCCATCCTGGCTGGTCACCTCTGAAGACTCTGGCGGGGCATGAGGGGAAGGTCATGGGGCTTGACCTTTCACCTGACGGACAGCTTATTGCAACCTGCTCTTATGACCGAACCTTCAAACTCTGGATGTCAGAA

Function

symbol description
prpf4 Predicted to enable U4 snRNA binding activity and U6 snRNA binding activity. Acts upstream of or within chordate embryonic development; mRNA splicing, via spliceosome; and sensory system development. Predicted to be located in nuclear speck. Predicted to be part of U4/U6 x U5 tri-snRNP complex. Is expressed in brain; eye; posterior lateral line primordium; and spinal cord. Used to study retinitis pigmentosa. Human ortholog(s) of this gene implicated in retinitis pigmentosa 70. Orthologous to human PRPF4 (pre-mRNA processing factor 4).

GO:

id name namespace
GO:0046540 U4/U6 x U5 tri-snRNP complex cellular_component

KEGG:

id description
K12662 PRPF4, PRP4; U4/U6 small nuclear ribonucleoprotein PRP4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000059_02100931_02106420.mRNA True 1524 mRNA 0.50 13 2100931 2106420

Neighbor

gene id symbol gene type direction distance location
CI01000059_02087382_02094472 SLC31A1 coding upstream 5195 2087335 ~ 2095736 (+)
CI01000059_02068570_02070710 NA coding upstream 30095 2068544 ~ 2071924 (+)
CI01000059_01985427_01999889 PJA2 coding upstream 100993 1985427 ~ 1999938 (+)
CI01000059_01893067_01914170 NA coding upstream 186685 1893067 ~ 1914246 (+)
CI01000059_01831592_01831849 NA coding upstream 267337 1830892 ~ 1833594 (+)
CI01000059_02133197_02134625 NA coding downstream 26583 2133003 ~ 2135347 (+)
CI01000059_02199027_02200947 CRYAB, CRYABB coding downstream 92543 2198963 ~ 2201185 (+)
CI01000059_02213426_02223792 NA coding downstream 107006 2213426 ~ 2224014 (+)
CI01000059_02246538_02247644 UFC1, UFC1.L coding downstream 140118 2246538 ~ 2248128 (+)
CI01000059_02252357_02259906 FDXACB1 coding downstream 145699 2252119 ~ 2260117 (+)
G252058 NA non-coding upstream 42794 2057860 ~ 2058137 (+)
G251941 NA non-coding upstream 90252 2008538 ~ 2010679 (+)
G251939 NA non-coding upstream 183446 1914261 ~ 1917485 (+)
G251999 NA non-coding upstream 193902 1906432 ~ 1907029 (+)
G251931 NA non-coding upstream 218218 1880408 ~ 1882713 (+)
G252067 NA non-coding downstream 4623 2111043 ~ 2111419 (+)
G252069 NA non-coding downstream 5560 2111980 ~ 2112225 (+)
G252072 NA non-coding downstream 16314 2122734 ~ 2123208 (+)
G252074 NA non-coding downstream 17544 2123964 ~ 2124297 (+)
G252075 NA non-coding downstream 18669 2125089 ~ 2125293 (+)
G251249 NA other upstream 439541 1627766 ~ 1661390 (+)
G251017 NA other upstream 1033574 1056252 ~ 1067357 (+)
G251046 NA other upstream 1121713 978741 ~ 979218 (+)
G252732 NA other downstream 1096319 3202739 ~ 3203091 (+)
G253654 NA other downstream 3131339 5237759 ~ 5238233 (+)
G254692 NA other downstream 4153623 6260043 ~ 6261633 (+)
G255434 NA other downstream 5338522 7444942 ~ 7450195 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030501 prpf4 coding NC_007116.7 CM002889.2 57442271 ~ 57453791 (+)