XLOC_030498


Basic Information

Item Value
gene id XLOC_030498
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 57238718 ~ 57241553 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061805
TGAGCTCAAGATGTGAATGATTTACAAGCGATACAAATTTCTGATGGAGATTAAcatgaacataaaataaaagctTCCATCACCGAATAAATAGTCCAGCACAAAGCAGAAGAGTTTGAGAAAGGACCGAGAACACAAACTTTTGCTTAttcttaaagaaacactccactttaagaaaaaataggcttattttaggCCTCCTATAATgttaacagttgagttttaccattttttaatccattctgctgatctccaggtctggcaggagcacgtTTAGCGTAGCATAAATAGTTGTATCGGGTTAGAACATTAGCATTCATTTATTccaaaaaatataatcaaaatagtTTGATAATATTTCTATTAAAACTCGACTTTTTTGTCGTTACATCATGTATtaagaatgacaaaaaaaataagttgctattttctaggttgatatggttaggaactatattctcattctggcgtaataatcaagtcgcggtgtaatatcattgcgcctgcaAACGACAGCAATGTTCCTTGCCAAAtgagtcaaactttaaataggaaaCATTTTcacatctttctctttttttttcttttttaattaggctaacggtctaatccgattcaattatgtatgctaagctaagctaaaagtgctccaaccAGACCCGAAGAtcaactgaatggattcaaaaactcAAGTGTTTAACTCAAAATATGAAAGTGTAGTTTATCTTTAAGATAACTGAGCTCAAGATGTGAATGATTTACAAGCGATACAAATTTCTGATGGAGATTAACATGAACACACTGTGCAAGTCAGACACGGGAAAGGGAAATCTTTAGGTTTCTGAATAACacgatttctttttttaatatattgctAAACAATACTGGCATTCGATTTAATACCTTGACAGTAGGAATTATAGTGAACGGTACACAAAAAAAGGCAAagattaaaaatgctaaataatattacagtatttcaaataaataaaaagaatcaaacaacacactatggataattgctttgatgcttaaaaaaacacgctaaaaaaggggggaaaaagcTTGTTGACCAGCAGTTTAAACAAAACgataataaaacacaaacataattTGATCTGGAGCTACCGGTGAATCATGCAAGGCTACGAATTGAAACTGTATTATACAGTAGCTCTGTGTGTAGTTCTGCATGATTGGCACATGCTTATAACAAACATACTTTGATTTCTGGGCTGCGTTGGTGATGGTAACAGTTTGAAGTgtgaattatttttattgcttGTGCTACGAGACCCTCTTTACATATTACAAATGTGCAAATACTAGAGCTGTACTGATTTGGGCTCTTCAAGCTGAAAGTTGAAGCTGGCAGAGATCCACTACCTTTTAATATCATTAGTTTCGCAGTGAAAAAAAACAACCTGAAATGCCTACCAAAATTACATCACTGAATCTACAAAAAagtatttacaaaatacaaaaaggaATGCTTTCATagagtaaaccttgaaaccactattccatttttttatttgggtaaaTGGAATGACATATTTATGTGACTCTGGAAACACAACGTTGCTGGTGAGAGCGAAGACTTGTCCATTTCAGCTCTTAGAACTTGGGAGCAAAGGGAAAATGGCACCTGACAAAAATGGCAGTGAAACAACCTGGAAAAAGTCTTAATACAAAAACACACCACCGACCAACCGAACATATAATACTTGTGTGAAATTCTAATCTATTAGAACTCAAGTGCTGTTTGAGTGAGAAACctgatctttaaaaataaaaacaaacacgaTTCATACTTTTGGTTGCTCTTTCTGAGGTCTGTAAATGTTTAAGGgaaagttcagccaaaaatgaaaacgcTGTGATCATCTGCTCTTTTTCTTCAATCTTTCATCTATTTGATACATTGGAAGTAAAGAGAAATTGGGACTctcaaattttaaatgtgaataGTCGATTGAACAGTTTGACGGCCAAAAATTGACGTAGTTATTTGCTGAAAATATTTCTTCAgaggtgaaataaaaaaaaaatcacatacttGTGtgaatcttaaagggatagttcacgcagaAGCTGCTATTAATTCACTCTCAGGACATCCGAAATGTAGATGACTTTTTTAgtagatataaaatataacagTAAAATATTTTGAAGGCTGAAATATTTTGAAGGCTGAAACTGGTGCTTTGGTGATTGATACAACGCAAGTCAATGGATGGaaacagagagaaaaacaaaaagaaaacttcATACAAATAGATTATGTTTTAGATTATGTTCTAGTGCTTATCCTGTCTTCTAAAGCTtatataaagcaaaataaagaCTTTTTCTGTTTAAATATCAGCAGTGGAAGAACACTAGAATATTCTGGATTTATGATTTATAGCTGTGTTCTAGCAAAATATCATTTGGTTCATTCTGTCAACATTTCAGCTAATTTAATGACATTAAATGACAATAAGTCTAAATGACAGAAAAGTGCAGTGTTTTTATCTTTATGTTCATATTTAGGCAACACAATGTCAAAGTTTTATCTTTAGAACAGttcaaaaaaacttaatatttagTGGAATAACTTAGAAAATGAcgttttcatttgttcattcaagaCAAAAAAACTCaactaaaacacaatatttatagaTGAAACTTGGAAACAGGTGCTTTTGTGAAcgataaaatgcaagtcaattgTTAGAAACACTTTTGAGAGTAAAACAAAAGGAAAACTACATCCAAACAGATGTTCTGTTGTTGATCAGAATGATACTTGTGCTTATCATGTGTTGTAAAGCCTACATAAAAGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061805 True 2836 lncRNA 0.33 1 57238718 57241553

Neighbor

gene id symbol gene type direction distance location
XLOC_030497 pja2 coding upstream 4600 57210237 ~ 57234118 (+)
XLOC_030496 NA coding upstream 213218 57021588 ~ 57025500 (+)
XLOC_030495 tmem232 coding upstream 240923 56965177 ~ 56997795 (+)
XLOC_030494 NA coding upstream 713025 56474610 ~ 56525693 (+)
XLOC_030493 NA coding upstream 800049 56433652 ~ 56438669 (+)
XLOC_030499 atp6v1g1 coding downstream 78560 57320113 ~ 57325557 (+)
XLOC_030500 slc31a1 coding downstream 86982 57328535 ~ 57354915 (+)
XLOC_030501 prpf4 coding downstream 200718 57442271 ~ 57453791 (+)
XLOC_030502 NA coding downstream 238461 57480014 ~ 57485614 (+)
XLOC_030503 cryabb coding downstream 400001 57641554 ~ 57650998 (+)
XLOC_030490 BX255908.1 non-coding upstream 978888 56258431 ~ 56259830 (+)
XLOC_030489 CR753837.1 non-coding upstream 980552 56256188 ~ 56258166 (+)
XLOC_030510 BX950179.1 non-coding downstream 796219 58037772 ~ 58037886 (+)
XLOC_030511 FQ378020.1 non-coding downstream 970608 58212161 ~ 58212284 (+)
XLOC_030514 NA non-coding downstream 1174511 58416064 ~ 58421500 (+)
XLOC_030525 NA non-coding downstream 1874316 59115869 ~ 59202263 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G251941 NA non-coding CI01000059 null 2008538 ~ 2010679 (+)