XLOC_030503 (cryabb)


Basic Information

Item Value
gene id XLOC_030503
gene name cryabb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 57641554 ~ 57650998 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059567
GAGGGAAGAGGGGAAGGGGAGAACACAGTGGGAGGGCTGCAGTGAAAGAGGCAAATGAACGTCATTCACATAATTATTCCAAAAAAGGTCCGTAGTGGGCTCGTCTGCCAGGGGCCGTCAGTATCACTCTATTTAAGTGCGTAGACAGAAGATTTGCAGAAGAGGCCCAGACTCAAAATGGACATCGCCATCAATCCCCCGTTCCGGCGCATCTTATTTCCTATCTTCTTTCCCCGCCGGCAATTTGGGGAGCATATTACTGAGGCCGACGTGATCTCCTCATTGTACTCCCAACGATCTTCCTTTCTTCGCAGTCCAAGCTGGATGGAAAGCGGAGTTTCTGAGGTGAAAATGGAAAAGGACCAATTCTCACTAAGTCTGGATGTTAAACACTTTGCACCAGAGGAGCTATCAGTGAAAATCATTGGAGATTTCATTGAAATTCATGCTAAACATGAAGATCGTCAGGACGGTCACGGTTTTGTCTCACGAGAGTTTTTGAGAAAATACCGTGTCCCTGTTGGTGTGGATCCAGCCTCCATCACGTCCTCGCTGTCTTCTGATGGTGTGCTGACAGTGACAGGCCCACTAAAGCTCTCAGACGGCCCAGAACGCACCATCGCCATCCCCGTAACTCGTGATGACAAAACCACCGTCGCTGGCCCTCAGAAGTAAAGATGCTAAACGTCAACTTTCAACCTTTTGTCTCTTGTCGTCACCTGTCTCAACATGCTTATGCTACATTACAAGGAAAATAATCACATTAACCTAATGCTAGCCTACTGACGGCCAAATGTTTGTGTTCTCTTAGAAAACAATTAGGGTTGAAATGGCGTCAAAACCACAGTCTTTACCCAAAcgaaatacattttcttttacaATAAAGTATTGTCTGCTGCTGATGCCACCAAACAAAGGAGCTTTTGTAGCTTATATCTTGCAGCCCGGACTGCAAGACAAAGTATTTGTGAGTAGGAGTCTCTTTCCTTGgcatttttgaaaaacaaaatggaTCACTGTATCAAActtcaacagaagagagaaacctATATACATTACTATTGAAACAAGTGTAGAAAACTATGGCTCATTGATCATTTTGGGTTCAAATATGCCTTTGCCTGGATTTGGGACCAGAATACAAAGCTAAAGAGGTGTAAATAGTTTCTTGAAAAAGTGAGTGTTTAACTGTTTTGAcctgatttgtttgtgttgaggCAGTTTATGATTGCTTTTCTGTTGCTCAACAACAGTGGTGCACTGCTTGACACAGTGGCTACAACGTTAAAAATAGGCAAAATGTTACTTAATGCaacttaaaacataataaataatatggtGACTTCACATTACTGCCAAATAAATGTTTctacaaaaataattaaagcaaatataaattatatttaaatgctatttttcagAAGGAGATATATTTTTGCATGTGAATAAGTGCCGAGAATTTATATTGTTTACAATCACTGAGACTATTCGGTTTCTTGTTAATGGCTGACTTATTCAACAATGATCAAGCtgctaatactaataatagtatcagtctattttttttttttttttttacagaaaactaatATGAGCAAGCTctgaaaaaaggaaaattatcCTTATTTCCTCATATTTCTATCACTCCTTAATAAAGGAActgtttaaaaggatagtttgcTCAAATATGAACTTTTATTCACTGTGTACTCGCCCTCAAGTGGCTTTAACATATTATGGGTTTCTTTTATTGAACACTAACTGGAAGTAAGCTGTAAACCTGAGAAGTGGTGACAGAATTTTGGGTGAAAAACTCAATTATCCCCACTAGAGGGAAGAAGTGAGAATGAGAATTTCAAAGCATGGCTGTGCGCTGAACATTGCTTATATTCCTCATTAATCACAGATTACACTGAATTAACCTATTGACTtcattaaatattgtttactgtggACTTTCAAAACCAGTGTgacatcaattttttttaaagtgtgtgtgtgtgtgtatacactacctgacaaaagtattgtagTTGATCACAGTTGTTAGAGAAACAAATataaacttgacttttagttgattatttggaaaagtggcagaaggtagatttttttctgatgaatcatctgttcactgcatctcaatcatcaaaaatactgttttattaaagatgaatgatgaatccaaagaa
>TCONS_00059568
GGCAAATGAACGTCATTCACATAATTATTCCAAAAAAGGTCCGTAGTGGGCTCGTCTGCCAGGGGCCGTCAGTATCACTCTATTTAAGTGCGTAGACAGAAGATTTGCAGAAGAGGCCCAGACTCAAAATGGACATCGCCATCAATCCCCCGTTCCGGCGCATCTTATTTCCTATCTTCTTTCCCCGCCGGCAATTTGGGGAGCATATTACTGAGGCCGACGTGATCTCCTCATTGTACTCCCAACGATCTTCCTTTCTTCGCAGTCCAAGCTGGATGGAAAGCGGAGTTTCTGAGGACGGTCACGGTTTTGTCTCACGAGAGTTTTTGAGAAAATACCGTGTCCCTGTTGGTGTGGATCCAGCCTCCATCACGTCCTCGCTGTCTTCTGATGGTGTGCTGACAGTGACAGGCCCACTAAAGCTCTCAGACGGCCCAGAACGCACCATCGCCATCCCCGTAACTCGTGATGACAAAACCACCGTCGCTGGCCCTCAGAAGTAAAGATGCTAAACGTCAACTTTCAACCTTTTGTCTCTTGTCGTCACCTGTCTCAACATGCTTATGCTACATTACAAGGAAAATAATCACATTAACCTAATGCTAGCCTACTGACGGCCAAATGTTTGTGTTCTCTTAGAAAACAATTAGGGTTGAAATGGCGTCAAAACCACAGTCTTTACCCAAAcgaaatacattttcttttacaATAAAGTATTGTCTGCTGCTGATGCCACCAAACAAAGGAGCTTTTGTAGCTTATATCTTGCAGCCCGGACTGCAAGACAAAGTATTTGTGAGTAGGAGTCTCTTTCCTTGgcatttttgaaaaacaaaatggaTCACTGTATCAAActtcaacagaagagagaaacctATATACATTACTATTGAAACAAGTGTAGAAAACTATGGCTCATTGATCATTTTGGGTTCAAATATGCCTTTGCCTGGATTTGGGACCAGAATACAAAGCTAAAGAGGTGTAAATAGTTTCTTGAAAA
>TCONS_00059569
CTCAAAATGGACATCGCCATCAATCCCCCGTTCCGGCGCATCTTATTTCCTATCTTCTTTCCCCGCCGGCAATTTGGGGAGCATATTACTGAGGCCGACGTGATCTCCTCATTGTACTCCCAACGATCTTCCTTTCTTCGCAGTCCAAGCTGGATGGAAAGCGGAGTTTCTGAGGTGAAAATGGAAAAGGACCAATTCTCACTAAGTCTGGATGTTAAACACTTTGCACCAGAGGAGCTATCAGTGAAAATCATTGGAGATTTCATTGAAATTCATGCTAAACATGAAGATCGTCAGGACGGTCACGGTTTTGTCTCACGAGAGTTTTTGAGAAAATACCGTGTCCCTGTTGGTGTGGATCCAGCCTCCATCACGTCCTCGCTGTCTTCTGATGGTGTGCTGACAGTGACAGGCCCACTAAAGCTCTCAGACGGCCCAGAACGCACCATCGCCATCCCCGTAACTCGTGATGACAAAACCACCGTCGCTGGCCCTCAGAAaagaaagaaactgaaacaggtttggaacaagtggaggGGGGCGTCGTGACGCTACAGTACGCCGTGCGTCAAAACTCTCTTCAGACCAGTTTCCAATGAGTGTGGAGTTTGAGTACAAGTCCTCGTTGGTTGAGCATCGCCATCCATACTGGCGGAATTTCATCTCATCTGTGAAATCGTACCAGACCTCAGACTGACCAGAGGCCCGAACCATGTGATGGAAAGCATGGCGGTTCTTCATCCAAGATAATACCTGGCTTTTATTGGACATCATCTTTAAAGAGCCTTGAGGGATAAAATAATGTCCATTTCTTTATTCAATTGTTTTGTTCACAGTAATCAGAATAAACGctgtaaattacaaataaatatatacatacaaatttCTATCAATTAACATACAAAAATATTAgaaatctcattttaattattttaattaaatcagtaattta

Function

symbol description
cryabb Enables unfolded protein binding activity. Acts upstream of or within several processes, including heart contraction; myofibril assembly; and skeletal muscle tissue development. Is expressed in several structures, including brain; heart; lens; liver; and otic vesicle. Human ortholog(s) of this gene implicated in cataract 16 multiple types; dilated cardiomyopathy 1II; fatal infantile hypertonic myofibrillar myopathy; and myofibrillar myopathy 2. Orthologous to human CRYAB (crystallin alpha B).

GO:

id name namespace
GO:0007519 skeletal muscle tissue development biological_process
GO:0030239 myofibril assembly biological_process
GO:0007626 locomotory behavior biological_process
GO:0060047 heart contraction biological_process
GO:0005575 cellular_component cellular_component
GO:0005212 structural constituent of eye lens molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-419 Enables unfolded protein binding activity. Acts upstream of or within several processes, including heart contraction; myofibril assembly; and skeletal muscle tissue development. Is expressed in several structures, including brain; heart; lens; liver; and otic vesicle. Human ortholog(s) of this gene implicated in cataract 16 multiple types; dilated cardiomyopathy 1II; fatal infantile hypertonic myofibrillar myopathy; and myofibrillar myopathy 2. Orthologous to human CRYAB (crystallin alpha B).

Ensembl:

ensembl_id ENSDARG00000101380

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059567 False 2192 mRNA 0.38 3 57641554 57645893
TCONS_00059568 False 1003 mRNA 0.44 2 57641603 57644876
TCONS_00059569 True 952 mRNA 0.44 5 57641725 57650998

Neighbor

gene id symbol gene type direction distance location
XLOC_030502 NA coding upstream 155940 57480014 ~ 57485614 (+)
XLOC_030501 prpf4 coding upstream 187763 57442271 ~ 57453791 (+)
XLOC_030500 slc31a1 coding upstream 286639 57328535 ~ 57354915 (+)
XLOC_030499 atp6v1g1 coding upstream 315997 57320113 ~ 57325557 (+)
XLOC_030498 NA coding upstream 400001 57238718 ~ 57241553 (+)
XLOC_030504 bicdl2 coding downstream 7900 57658898 ~ 57671298 (+)
XLOC_030505 ufc1 coding downstream 63904 57714902 ~ 57718850 (+)
XLOC_030506 fdxacb1 coding downstream 75427 57726425 ~ 57738336 (+)
XLOC_030507 alg9 coding downstream 92817 57743815 ~ 57763179 (+)
XLOC_030508 ppp2r1ba coding downstream 122224 57773222 ~ 57798096 (+)
XLOC_030496 NA non-coding upstream 616054 57021588 ~ 57025500 (+)
XLOC_030494 NA non-coding upstream 1115861 56474610 ~ 56525693 (+)
XLOC_030493 NA non-coding upstream 1202885 56433652 ~ 56438669 (+)
XLOC_030510 BX950179.1 non-coding downstream 386774 58037772 ~ 58037886 (+)
XLOC_030511 FQ378020.1 non-coding downstream 561163 58212161 ~ 58212284 (+)
XLOC_030514 NA non-coding downstream 765066 58416064 ~ 58421500 (+)
XLOC_030525 NA non-coding downstream 1464871 59115869 ~ 59202263 (+)
XLOC_030530 NA non-coding downstream 1838322 59489320 ~ 59489621 (+)

Expression


Co-expression Network