XLOC_030507 (alg9)


Basic Information

Item Value
gene id XLOC_030507
gene name alg9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 57743815 ~ 57763179 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059575
GACGTCACGCACAGCCAGTAGAAACATGGCGACGAAGAGTCTCCGTCAGCGCAGCAGACGGGGGAGCAAACAGGACGCCAACAACGTGAACAACACACCTACCCCTGAAAACCGAGCCACAAAAGACGACAAATGTGCTGAGGACAATAAGTCCAGTGACCCCCGAAATGAGTCATCCGGTAAGGCAGGTCAGGTTTGGGCTCCTGAGGGCTCCACAGCCTTCAAGTGCCTGGTTTCAGCCCGCTTCTGTGCCGCACTGCTCAGTAACCTCTCTGACTGTGATGAAACCTTCAATTACTGGGAGCCAACTCACTACTTGCTCTATGGAACAGGGATGCAGACATGGGAGTATTCCCCATCCTACGCCATTCGTTCCTATGCGTATCTCTGGCTCCATGCCCTTCCTGCCTGCTTTCATGCCAAAATATTACAGACAAACAAGGTCCTTGTGTTTTATTTCCTGCGCTGCATGTTAGCGTTtggctgttgtgtgtgtgagcTCTACTTCTATAAGGCTGTGTGTAAGAAATTTGGCCTACATGTGGGACGGCTTCTGCTGGCGTTCCTCGTCCTGAGTGCAGGGATGTTCTGCTCCTCTGCAGCTTTCCTGCCAAGTACTTTTTGCATGTACAGTACAGTGGTAGCTATGACTGGCTGGTTTCAGGGGCGTCCGAGTCTGGCTGTGCTGGGTGTCGCAGCAGGGGCCATTGTGGGCTGGCCCTTCAGTGCTCTGCTTGGGATACCCATTGCCTTTGACCTTCTGTGGCTGAAGAAGAAATGGAAGAGTTTTATCATGTGGACACTAGTGGCATTGCTGCTCTTTCTGgTCCCTGTGGTTATAGTAGACAGCTACTACTATGGCAAGCTGGTGATTGCTCCTCTGAATATAATACTGTACAATGTATTTACTCCTCATGGGCCAGATCTCTATGGCACAGAGCCCTGGCATTACTACTTTGTGAATGGTTTTCTTAATTTCAACATTGTGTTTGTGTTGGCCCTGTTTTCTCTTCCTCTCACGGCGCTTATGGAGGCACTGCTTCAAAGATTCAATGTTCAGAACCTCGGCCGGCCGTACTGGTTAACTTTGTCTCCAATGTACCTGTGGATGCTGGTCTTCTTCACTCGCCCGCATAAAGAGGAACGCTTTCTGTTTCCCATCTACCCGCTCATCTGTCTGTGCGGGGCAGTGGCGCTCTCCTCATTGCAGAAGTGCTATCACTTCATTTTTCAACGCTATCGTCTGGAGCACTACACTATCTCCTCCAACTGGCTGGCTCTGGGTTCTGTGCTGCTGTTTGGAGTGCTCTCGCTGTCTCGATCTGTGGCCCTATTCAGAGGCTATCATGCTCCGCTGGATTTGTACCCAGAGTTTCATCGCATTGCTAAAGATCCTGCAATCCACACCGTTCCAGAGGGAAGACTGGTCAATGTTTGTGTCGGGAAAGAGTGGTACCGCTTTCCCAGCAGCTTTTTCCTGCCTAACAACTGGCACCTACAGTTTATCCAGTCAGAATTCAGGGGTCAGTTACCTAAGCCATATGCCATGGGTCCTGATGCCACCTGGATCATCCCACCAGACATGAATGATCAGAATCTTGAGGAGACATCACGATACGTAGATTTGAAGCAGTGTCATTACCTGGTGGATCTGGCAACAGAAACTGAAGCCCCTCGTGAACCACGATATGCCGCGAACAAAGAGGAGTGGAGCGTTATTGCTGACAAGCCTTTTCTAGACTCTACCAGGTCCTCCAGAATTCTCAGGGCCTTTTTTATCCCGTTTCTGTCAGAGCAATACAACACCTACAGCAGATACGTCATCCTCAAACCGAGGCGACCCAAACACACGCGGAAGAGACCGCAGGCCTGACCTGCCATTCCTGCTCTTTTCCATCATTGCATTCCTCCATCCGTCTCCTTTCCTGCCGTGCTTCCTCATTTGCTTCCGAGATGTTCCTGCTCTTTCTGtgctcatatgtgtgtgtgattgtgtttaaGTGTGAGCGAGTGAGTGTTTGTTTTTGACCATCTTTGCTATGAAGCCATGCAGTGTTGGCCTTTATGTAGACATCAGATCCAGCACAGAGCATGGATGCCTTACCCATCATCCCGATTCTCTCTGCTTCATTCCATGCCTTCGTTTTCTTTATTCCTGCTCTGGCTTCTCTGCAGCGTTTCAGAAGAGCTCTGTTTAGACGACCCTTTAAGGACTTAATGTCCCTTATTTGTTATGACATCATTCTTGATCTGGGACAATGAACTGTTTCTCCACGAATGCAGACCCAAACCAGATCTCACGTGTTATCATCCAGAGCCATGAACTGCTCTTCATTCGTCCTGTTGGAGCCGTTCGTTCAGGCCTGCTTCAGCATTTCAGGATGAAAGTTGCACCAAACTCTCTCCGTTCTGTCATCTGTGGAAGTGGACATTGACTGTGAGGTCTGACGGCAGACCAGGACAATTGAGTGTTTACATTCCAAATCATGTCTGTCATATCATATCAGTGTTAACTGTGATTGAGTGTAATAAAAGAAGGCTGTCTTAA

Function

symbol description
alg9 Predicted to enable alpha-1,2-mannosyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in central nervous system; epiphysis; polster; and retina. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Il. Orthologous to human ALG9 (ALG9 alpha-1,2-mannosyltransferase).

GO:

id name namespace
GO:0006487 protein N-linked glycosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0000026 alpha-1,2-mannosyltransferase activity molecular_function
GO:0000030 mannosyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko00513 Various types of N-glycan biosynthesis
ko01003 Glycosyltransferases

ZFIN:

id description
ZDB-GENE-040426-1270 Predicted to enable alpha-1,2-mannosyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in central nervous system; epiphysis; polster; and retina. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Il. Orthologous to human ALG9 (ALG9 alpha-1,2-mannosyltransferase).

Ensembl:

ensembl_id ENSDARG00000012840

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059575 True 2548 mRNA 0.49 15 57743815 57763179

Neighbor

gene id symbol gene type direction distance location
XLOC_030506 fdxacb1 coding upstream 5479 57726425 ~ 57738336 (+)
XLOC_030505 ufc1 coding upstream 24965 57714902 ~ 57718850 (+)
XLOC_030504 bicdl2 coding upstream 72517 57658898 ~ 57671298 (+)
XLOC_030503 cryabb coding upstream 92817 57641554 ~ 57650998 (+)
XLOC_030502 NA coding upstream 258201 57480014 ~ 57485614 (+)
XLOC_030508 ppp2r1ba coding downstream 10043 57773222 ~ 57798096 (+)
XLOC_030509 btg4 coding downstream 161432 57924611 ~ 57926693 (+)
XLOC_030510 BX950179.1 coding downstream 274593 58037772 ~ 58037886 (+)
XLOC_030511 FQ378020.1 coding downstream 448982 58212161 ~ 58212284 (+)
XLOC_030512 nrgna coding downstream 608985 58372164 ~ 58382655 (+)
XLOC_030498 NA non-coding upstream 502262 57238718 ~ 57241553 (+)
XLOC_030496 NA non-coding upstream 718315 57021588 ~ 57025500 (+)
XLOC_030494 NA non-coding upstream 1218122 56474610 ~ 56525693 (+)
XLOC_030493 NA non-coding upstream 1305146 56433652 ~ 56438669 (+)
XLOC_030514 NA non-coding downstream 652885 58416064 ~ 58421500 (+)
XLOC_030525 NA non-coding downstream 1352690 59115869 ~ 59202263 (+)
XLOC_030530 NA non-coding downstream 1726141 59489320 ~ 59489621 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_02262610_02274923 ALG9 coding CI01000059 null 2262267 ~ 2275181 (+)