XLOC_030508 (ppp2r1ba)


Basic Information

Item Value
gene id XLOC_030508
gene name ppp2r1ba
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 57773222 ~ 57798096 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059576
TGTGCACACAACAGTCTCCAGGCGGCAGACTGAGAAACCCCGTAGCAGGAACTAGCTAAGCAGCCTTTAGCATCCAAGATGGCGGGAGCAGACAGCGACGACTCTCTTTACCCGATTGCCGTGCTAATCGATGAGTTAAGAAATGAAGATGTTCAGTTACGATTAAACAGCATCAAGAAACTGTCTACCATTGCCTTAGCTTTGGGGGTTGAAAGGACACGTACTGAACTTCTACCTTTCCTCACAGATACCATATACGATGAAGATGAAGTTCTGCTTGCCCTTGCTGAACAATTGGGTAACTTCACCATGCTGGTTGGAGGCCCAGAATATGTGCATTGTCTCCTtCCCCCTTTGGAGAGTCTGGCAACAGTTGAAGAGACGGTGGTGCGGGACAAGGCAGTGGAGTCCCTGCGGAAGATCTCCCATGAGCATTCTCCAGTGGACCTGGAAGTGCACTTTGAGCCTCTGGTGAAGCGTTTAGCCAGCGGTGACTGGTTCACGTCACGTACCTCTGCTTGTGGGCTCTTCAGCGTCTGCTACCCACGTGTTTCCAGTACCGTCAAGGCTGAGATTCGCCAGCACTTCCGCACCTTGTGTTCTGATGACACTCCTATGGTGCGCCGTGCAGCCGCTTCCAAACTGGGTGAATTTGCCAAAGTGTTGGAGCTGGAGTATGTCAAGAGTGACATCATTTCTCTCTTCACTGCGTTGGCATCTGATGAACAGGACTCTGTTCGTCTCCTGGCTGTGGAGGCTGGCGTCAGCATTGCCACTCTGTTGCCTCAAGAGGATCTGGAAGCTCTGGTGATGCCAACTCTGCGCCAGGCAGCAGAAGACAAGTCCTGGAGGGTTCGCTACATGGTTGCAGACAAATTCTCTGATCTGCAAAAGGCTGTTGGTCCAGAAATCACAAAGAATGACCTAGTGCCAGCCTTCCAGAACCTTCTGAAAGACTGTGAGGCTGAGGTTCGTGCTGCTGCTGCAAACAAAGTCAAAGAATTCTGCGAAAACTTACCAGAGGACAGCAGAGAGACGATTATCATGACACACATTCTCCCCTGTGTTAAGGAACTAGTCTCAGACACTAATCAGCATGTGAAGTCTGCACTGGCATCAGTCATTATGGGCCTGTCCACCATCTTAGGCAAAGACAACACCATTGAGCACCTGCTCCCCCTTTTCTTGGCCCAGCTCAAAGATGAGTGCCCAGAGGTTCGCCTTAACATCATCTCCAATTTGGACTGTGTGAACGAGGTGATTGGTATCCGCCAACTTTCCCAGTCTTTGCTTCCGGCCATTGTGGAGTTGGCTGAGGACGCCAAATGGCGAGTACGACTGGCAATCATCGAGTACATGCCCCTTCTGGCTGGGCAGCTGGGTGTGGAGTTTTTTGATGAGAAGCTCAATTCTCTTTGCATGGCTTGGCTTGTTGATCATGTTTATGCTATCAGAGAGGCAGCCACCTGTAACCTGATGAAGCTAGTGGAGAAGTTTGGGGCAGAGTGGGCACAGAACACTATTGTGCCTAAAGTACTGGGCATGGCTAACGACCCCAACTACCTGCACAGGATGACTACCCTCTTCTGCATTAATGCTCTGTCTGAGGTGTGTGGGCAGGAGATTACCACCAAACACATGCTCCCTGTagttttaaagatgtctaatGACCAGGTAGCCAACGTACGTTTCAACGTGGCCAAGTCTCTTCAGAAGATCGGACCTGTGCTGGACAGCAGTTGTCTGCAGACAGAGGTGAAACCAGTGCTGGAGAAACTGGCATCAGATCAAGACATGGATGTCAAATATTTCGCCCAGGAGGCCATCAGTGTTCTTTCCCTGGCCTAATGTTCCTTCTCGCTGAACCTAAGACCCATCTCAAGCTGACCTCCATTGTATTTATTGACATCCACAATCGTCCACTGGACTGTTTATGGCGAAACAATGTGTTTTGTTCCCTCTCAGTGAGAAATGTTTTAGGGATACTTGGATTCCGTCAGTATTTTGTTGACCACACACATCCTCTTGCTCTTCATACTACACGATAGACCCTACGGATCCCCTTTTGCTGTGTGTATGTTCACTCTTTAACCCACacaattaaatgacatttactaTCCACTTAACAATGTAACCAAGCATCATAATAGATAATAAAATAGATGGTGGTCCAGATTTTACTTCAGCCGTCTGATCTGATGGACTGATCCATGTTTGCTCTTTGCGCTCATTTTAAGCTAGAGTTGACCCATGCATGTGCACAGCATGATGGGCCGAATCACTACTGCAACTGTCAATTAAATACTGTGTTCCTGCGCTCTGTCCTACACTGATTATTGTCGAACGAAGACCCATAAAGCACTAGACGCATGTTCGTTCTCTGATACCATTCTCAAAGTTCTTCTAATTTTTTTAAGGGACCATGACAGACATCCATCTCTTTCCAGCAACTGTTATAACAGAGGATGGGCATTCCTTAACGGCCCTTTTTTATCTTAAGAAGGCAAGCTTCTTCATTCTGTGCCATTGACCATGTTgcacattctttctttcttttttttttttttttgatttgtttaaaaaaaaatgttgaacttgtGTACGAGTTCATCTGCATGCCTCTTGCACTCCGGTTTCATTGGCCATAGCCACATTGAGAAGCTCATTAATCACAAGGCATATTAAAGTCTCTTCTTTAACATGTTGCTTTTTGCCTGTGATGTTGACTGTCCGATTCTTCTTCAGCTTCAGAGTGCTGTCAGTATAGTACTATCTGCTATGTAAAGTGTCTTTAGATTGTGCTTTGGGTTTTATATGAATATGGTCTCATTGCCCTTGATAGAAGGGAACTCAATAAAGAACGTTATATAACCCTTTTTCACA

Function

symbol description
ppp2r1ba Predicted to enable protein phosphatase regulator activity. Predicted to be involved in protein dephosphorylation. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 36. Orthologous to several human genes including PPP2R1B (protein phosphatase 2 scaffold subunit Abeta).

GO:

id name namespace
GO:0000159 protein phosphatase type 2A complex cellular_component
GO:0008287 protein serine/threonine phosphatase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019888 protein phosphatase regulator activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2700 Predicted to enable protein phosphatase regulator activity. Predicted to be involved in protein dephosphorylation. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 36. Orthologous to several human genes including PPP2R1B (protein phosphatase 2 scaffold subunit Abeta).

Ensembl:

ensembl_id ENSDARG00000007791

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059576 True 2883 mRNA 0.47 15 57773222 57798096

Neighbor

gene id symbol gene type direction distance location
XLOC_030507 alg9 coding upstream 10043 57743815 ~ 57763179 (+)
XLOC_030506 fdxacb1 coding upstream 34886 57726425 ~ 57738336 (+)
XLOC_030505 ufc1 coding upstream 54372 57714902 ~ 57718850 (+)
XLOC_030504 bicdl2 coding upstream 101924 57658898 ~ 57671298 (+)
XLOC_030503 cryabb coding upstream 122224 57641554 ~ 57650998 (+)
XLOC_030509 btg4 coding downstream 126515 57924611 ~ 57926693 (+)
XLOC_030510 BX950179.1 coding downstream 239676 58037772 ~ 58037886 (+)
XLOC_030511 FQ378020.1 coding downstream 414065 58212161 ~ 58212284 (+)
XLOC_030512 nrgna coding downstream 574068 58372164 ~ 58382655 (+)
XLOC_030513 HEPACAM coding downstream 599550 58397646 ~ 58412538 (+)
XLOC_030502 NA non-coding upstream 287608 57480014 ~ 57485614 (+)
XLOC_030498 NA non-coding upstream 531669 57238718 ~ 57241553 (+)
XLOC_030496 NA non-coding upstream 747722 57021588 ~ 57025500 (+)
XLOC_030494 NA non-coding upstream 1247529 56474610 ~ 56525693 (+)
XLOC_030493 NA non-coding upstream 1334553 56433652 ~ 56438669 (+)
XLOC_030514 NA non-coding downstream 617968 58416064 ~ 58421500 (+)
XLOC_030525 NA non-coding downstream 1317773 59115869 ~ 59202263 (+)
XLOC_030530 NA non-coding downstream 1691224 59489320 ~ 59489621 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00004544 LOC107600790,LOC107577576,LOC107735118 coding CM030121.1 CM030121.1 53117060 ~ 53150892 (-)