RNA id: TCONS_00059576


Basic Information

Item Value
RNA id TCONS_00059576
length 2883
RNA type mRNA
GC content 0.47
exon number 15
gene id XLOC_030508
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 57773222 ~ 57798096 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTGCACACAACAGTCTCCAGGCGGCAGACTGAGAAACCCCGTAGCAGGAACTAGCTAAGCAGCCTTTAGCATCCAAGATGGCGGGAGCAGACAGCGACGACTCTCTTTACCCGATTGCCGTGCTAATCGATGAGTTAAGAAATGAAGATGTTCAGTTACGATTAAACAGCATCAAGAAACTGTCTACCATTGCCTTAGCTTTGGGGGTTGAAAGGACACGTACTGAACTTCTACCTTTCCTCACAGATACCATATACGATGAAGATGAAGTTCTGCTTGCCCTTGCTGAACAATTGGGTAACTTCACCATGCTGGTTGGAGGCCCAGAATATGTGCATTGTCTCCTtCCCCCTTTGGAGAGTCTGGCAACAGTTGAAGAGACGGTGGTGCGGGACAAGGCAGTGGAGTCCCTGCGGAAGATCTCCCATGAGCATTCTCCAGTGGACCTGGAAGTGCACTTTGAGCCTCTGGTGAAGCGTTTAGCCAGCGGTGACTGGTTCACGTCACGTACCTCTGCTTGTGGGCTCTTCAGCGTCTGCTACCCACGTGTTTCCAGTACCGTCAAGGCTGAGATTCGCCAGCACTTCCGCACCTTGTGTTCTGATGACACTCCTATGGTGCGCCGTGCAGCCGCTTCCAAACTGGGTGAATTTGCCAAAGTGTTGGAGCTGGAGTATGTCAAGAGTGACATCATTTCTCTCTTCACTGCGTTGGCATCTGATGAACAGGACTCTGTTCGTCTCCTGGCTGTGGAGGCTGGCGTCAGCATTGCCACTCTGTTGCCTCAAGAGGATCTGGAAGCTCTGGTGATGCCAACTCTGCGCCAGGCAGCAGAAGACAAGTCCTGGAGGGTTCGCTACATGGTTGCAGACAAATTCTCTGATCTGCAAAAGGCTGTTGGTCCAGAAATCACAAAGAATGACCTAGTGCCAGCCTTCCAGAACCTTCTGAAAGACTGTGAGGCTGAGGTTCGTGCTGCTGCTGCAAACAAAGTCAAAGAATTCTGCGAAAACTTACCAGAGGACAGCAGAGAGACGATTATCATGACACACATTCTCCCCTGTGTTAAGGAACTAGTCTCAGACACTAATCAGCATGTGAAGTCTGCACTGGCATCAGTCATTATGGGCCTGTCCACCATCTTAGGCAAAGACAACACCATTGAGCACCTGCTCCCCCTTTTCTTGGCCCAGCTCAAAGATGAGTGCCCAGAGGTTCGCCTTAACATCATCTCCAATTTGGACTGTGTGAACGAGGTGATTGGTATCCGCCAACTTTCCCAGTCTTTGCTTCCGGCCATTGTGGAGTTGGCTGAGGACGCCAAATGGCGAGTACGACTGGCAATCATCGAGTACATGCCCCTTCTGGCTGGGCAGCTGGGTGTGGAGTTTTTTGATGAGAAGCTCAATTCTCTTTGCATGGCTTGGCTTGTTGATCATGTTTATGCTATCAGAGAGGCAGCCACCTGTAACCTGATGAAGCTAGTGGAGAAGTTTGGGGCAGAGTGGGCACAGAACACTATTGTGCCTAAAGTACTGGGCATGGCTAACGACCCCAACTACCTGCACAGGATGACTACCCTCTTCTGCATTAATGCTCTGTCTGAGGTGTGTGGGCAGGAGATTACCACCAAACACATGCTCCCTGTagttttaaagatgtctaatGACCAGGTAGCCAACGTACGTTTCAACGTGGCCAAGTCTCTTCAGAAGATCGGACCTGTGCTGGACAGCAGTTGTCTGCAGACAGAGGTGAAACCAGTGCTGGAGAAACTGGCATCAGATCAAGACATGGATGTCAAATATTTCGCCCAGGAGGCCATCAGTGTTCTTTCCCTGGCCTAATGTTCCTTCTCGCTGAACCTAAGACCCATCTCAAGCTGACCTCCATTGTATTTATTGACATCCACAATCGTCCACTGGACTGTTTATGGCGAAACAATGTGTTTTGTTCCCTCTCAGTGAGAAATGTTTTAGGGATACTTGGATTCCGTCAGTATTTTGTTGACCACACACATCCTCTTGCTCTTCATACTACACGATAGACCCTACGGATCCCCTTTTGCTGTGTGTATGTTCACTCTTTAACCCACacaattaaatgacatttactaTCCACTTAACAATGTAACCAAGCATCATAATAGATAATAAAATAGATGGTGGTCCAGATTTTACTTCAGCCGTCTGATCTGATGGACTGATCCATGTTTGCTCTTTGCGCTCATTTTAAGCTAGAGTTGACCCATGCATGTGCACAGCATGATGGGCCGAATCACTACTGCAACTGTCAATTAAATACTGTGTTCCTGCGCTCTGTCCTACACTGATTATTGTCGAACGAAGACCCATAAAGCACTAGACGCATGTTCGTTCTCTGATACCATTCTCAAAGTTCTTCTAATTTTTTTAAGGGACCATGACAGACATCCATCTCTTTCCAGCAACTGTTATAACAGAGGATGGGCATTCCTTAACGGCCCTTTTTTATCTTAAGAAGGCAAGCTTCTTCATTCTGTGCCATTGACCATGTTgcacattctttctttcttttttttttttttttgatttgtttaaaaaaaaatgttgaacttgtGTACGAGTTCATCTGCATGCCTCTTGCACTCCGGTTTCATTGGCCATAGCCACATTGAGAAGCTCATTAATCACAAGGCATATTAAAGTCTCTTCTTTAACATGTTGCTTTTTGCCTGTGATGTTGACTGTCCGATTCTTCTTCAGCTTCAGAGTGCTGTCAGTATAGTACTATCTGCTATGTAAAGTGTCTTTAGATTGTGCTTTGGGTTTTATATGAATATGGTCTCATTGCCCTTGATAGAAGGGAACTCAATAAAGAACGTTATATAACCCTTTTTCACA

Function

GO:

id name namespace
GO:0000159 protein phosphatase type 2A complex cellular_component
GO:0008287 protein serine/threonine phosphatase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019888 protein phosphatase regulator activity molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2700 Predicted to enable protein phosphatase regulator activity. Predicted to be involved in protein dephosphorylation. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 36. Orthologous to several human genes including PPP2R1B (protein phosphatase 2 scaffold subunit Abeta).

Ensembl:

ensembl_id ENSDART00000135344

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059573 lncRNA upstream 54489 57715810 ~ 57718733 (+) True XLOC_030505
TCONS_00061806 lncRNA upstream 288756 57480014 ~ 57484466 (+) False XLOC_030502
TCONS_00061805 lncRNA upstream 531669 57238718 ~ 57241553 (+) True XLOC_030498
TCONS_00061804 lncRNA upstream 747722 57021588 ~ 57025500 (+) True XLOC_030496
TCONS_00061472 lncRNA upstream 1247529 56514990 ~ 56525693 (+) True XLOC_030494
TCONS_00059583 lncRNA downstream 617968 58416064 ~ 58417514 (+) False XLOC_030514
TCONS_00061473 lncRNA downstream 619198 58417294 ~ 58421500 (+) True XLOC_030514
TCONS_00059600 lncRNA downstream 1317773 59115869 ~ 59202263 (+) True XLOC_030525
TCONS_00061807 lncRNA downstream 1590197 59388293 ~ 59389887 (+) True XLOC_030528
TCONS_00061474 lncRNA downstream 1691224 59489320 ~ 59489621 (+) True XLOC_030530
TCONS_00059575 mRNA upstream 10043 57743815 ~ 57763179 (+) True XLOC_030507
TCONS_00059574 mRNA upstream 34886 57726425 ~ 57738336 (+) True XLOC_030506
TCONS_00059572 mRNA upstream 54372 57715614 ~ 57718850 (+) False XLOC_030505
TCONS_00059571 mRNA upstream 54751 57714902 ~ 57718471 (+) False XLOC_030505
TCONS_00059570 mRNA upstream 101924 57658898 ~ 57671298 (+) True XLOC_030504
TCONS_00059577 mRNA downstream 126515 57924611 ~ 57926693 (+) True XLOC_030509
TCONS_00059580 mRNA downstream 574068 58372164 ~ 58382655 (+) False XLOC_030512
TCONS_00059582 mRNA downstream 599550 58397646 ~ 58412538 (+) True XLOC_030513
TCONS_00059584 mRNA downstream 623440 58421536 ~ 58450649 (+) True XLOC_030515
TCONS_00059585 mRNA downstream 657392 58455488 ~ 58481928 (+) False XLOC_030516
TCONS_00059556 other upstream 1467411 56290135 ~ 56305811 (+) True XLOC_030492
TCONS_00059550 other upstream 1515056 56256188 ~ 56258166 (+) True XLOC_030489
TCONS_00059549 other upstream 1524487 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059541 other upstream 2101640 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059516 other upstream 3664708 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059578 other downstream 239676 58037772 ~ 58037886 (+) True XLOC_030510
TCONS_00059579 other downstream 414065 58212161 ~ 58212284 (+) True XLOC_030511
TCONS_00059581 other downstream 574127 58372223 ~ 58382646 (+) True XLOC_030512
TCONS_00059609 other downstream 1638404 59436500 ~ 59479829 (+) False XLOC_030529
TCONS_00059620 other downstream 1957048 59755144 ~ 59755261 (+) True XLOC_030535

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU286337 False 2877 lncRNA 0.47 15 CI01000059 2287713 ~ 2308766 (-)
bowfin (Amia calva) AMCG00004544 True 3720 mRNA 0.53 17 CM030121.1 53117060 ~ 53150892 (-)