XLOC_030492 (aatf)


Basic Information

Item Value
gene id XLOC_030492
gene name aatf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 56277866 ~ 56306081 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059553
GATGATGTCACAGTAAGTTGCAGCGTGGGACAGACATGGCAGCTTCCATATCACAGCAGCTCGAGGATTTGTTAAATCCTTTACCACACTTCGTGGACCCCGAGGACGACCAAGATGAAGACACCAAAGCGAAAGTCATAGAGAAGTTTGATGAAGGAGGTGATGAGAACGATGAAGAGCTTTTACCTGGTCATCTGCGGAAACGCTCTGGGGCCATTCTGGCTGATGGTGACCAACGATATCGTGGAAAGGCAACATCCAGAAAAGACCTACAGAAAGATTTGGATGGATCAGcagatgaagatgatgatgataatgatgatggtgttgatgatgaagatgaaagtgGAATGCTGGAAAAGTACATGGAATGcatggatgatgatgatgataatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgttgagcATCAAAATGATGATGACGAGGATCTCGTTGGAGATGATGGTTCACAGATGTCCAGCTTGGTCTCCAAAATGAAGGGCACAGATTTTATGAAACTCACAGAGGGATTGGATGACCTGGGAGACAGTGACGAAGATGAGGAAACTGCTGACAGTGAAGAAGAGGAAGGAGAGAGTGATGAAGGCTCCGAGGAGGAgatggaagaagaggaggaatCAGGCTTGAGGACCTTCTCAAAAGAGAAAGTCGATGAAGAGGTTGAAAAAGGGAGAGCCGTGAAAAATCAGCTTGCCCTTTGGGACCTGATGCTTGAAAGGCGGATCAAAATGCAGAAAGCTCTTGTGACAGCCAATCAACTTCCACAACCACAAACATTCTCAGAGTTCAAGAGCAGGGGAGGGGCTGAATATGCTGATGCTTTGAAAAATAGTCATAAAGCTCTCAAGGCTCTACAAAGGTCTCTGCTGGAACTTCAAGATCTGCTGCTCCACCAAAACAAGGAAACAAGAGCCATCTCTCAGGGCAAAACCTGGGGGGATGGCAGTGctaaagatgatgatgaagagatTAATAGTGAAGATGATATGGATGAAAATGAAGGTGATGACCAAGAGGTAGAACAGAAAGCAGCTCGAAACGGACCTCCCAAACGAAAACTGGAAATGGCAGATTATCCCAACTTTATGGCCAAACGCTTTGCTGCATTTCAACCGTATCGTGATACTACTCTCCAGAAATGGTATGACAAGACACGGCTAACAACGGGGAAGAACAATAAGGGTTTTGGAGCATTTGACAGGAACATCCTGACGCAGGTGGAACAGGTTTTAATGGACAAAGAGAGGCTGGTGAGGCGTACACAGACGCGCAGGTCTGAATACAGAGTCCTGGGGAAACCAGAGCCAGTTACTCCTGAAATAGACAACACCATCTCAGAGGGAGAGGTGGCTGAACTGGCAGTAAAAGCCAACATGCACCTCAAAGATCTGGATGAGAAcatttttgatgatgatgatttttatcATCAGCTTCTCCGAGAGCTTATTGAGCGCAAAACAAGTGCAACAGACCCCAATGATCAAGTGGCCATGGgaaaGCAATGGCTTGCTATCCAGAAACTGCGTAGTAAAATCAAGAAGAAGGTGGACACCAAAGCCAGCAAAGGCAGAAAAATCAGGTTTCACGTTCACAGTAAGCTGATGAATTTTATGGCTCCTATGGACAACAGCAGCATGAGCGATGATGCACGGTCTGAGCTGTTTCGTTCCTTGTTTGCAAATGGTCCAGTGACAACACAATGACTGAAACATCTGTCCCAACATGCTTATACTCCGGGTGTGTGTGTACTACAGATGTCCACACACGCGCCCATACTTATCTACTGCTCTTGCTGGTGAAATCCCTCAGGAACCCCAAACATATTTCCTTCTTTAAGTGACTTGCtgtaaatgaaactaaagagtTATTGTGATTTGTGAGCTGACACATTTTAGTGCCtctttatattaaaaacattgtcaacacacacacacacacagagtgtttTCATTGATGTCCTAATTGTACTGTTAGCACATGATTAAATCTAGTGAAAGCGATATCTACCTCTAAATGAATTCCCTTGTCTGGAAGCGTTCTGTAATGTTATCTGATCTGTGGTATCAGAGGAACCTTCACCTTCAATTATCTGCTTAAGTTTTCATTATTGTGTCTGTCATAAATATAATTGGCTATTGAATTGGTGTGATTCAATTTGGTTGTTGGTGGGTAGAAGGAATATAGACTGAGAAAGCCACTCAGAGGGGGCTGAATGAGAGAATGATTGGAGAACTGATAAATCAATGAAAGTGTGTTCCTGGATCATTCTGTCTGCCATTTGATTTCTC
>TCONS_00059554
ATGTCACAGTAAGTTGCAGCGTGGGACAGACATGGCAGCTTCCATATCACAGCAGCTCGAGGATTTGTTAAATCCTTTACCACACTTCGTGGACCCCGAGGACGACCAAGATGAAGACACCAAAGCGAAAGTCATAGAGAAGTTTGATGAAGGAGGTGATGAGAACGATGAAGAGCTTTTACCTGGTCATCTGCGGAAACGCTCTGGGGCCATTCTGGCTGATGGTGACCAACGATATCGTGGAAAGGCAACATCCAGAAAAGACCTACAGAAAGATTTGGATGGATCAGcagatgaagatgatgatgataatgatgatggtgttgatgatgaagatgaaagtgGAATGCTGGAAAAGTACATGGAATGcatggatgatgatgatgataatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgttgagcATCAAAATGATGATGACGAGGATCTCGTTGGAGATGATGGTTCACAGATGTCCAGCTTGGTCTCCAAAATGAAGGGCACAGATTTTATGAAACTCACAGAGGGATTGGATGACCTGGGAGACAGTGACGAAGATGAGGAAACTGCTGACAGTGAAGAAGAGGAAGGAGAGAGTGATGAAGGCTCCGAGGAGGAgatggaagaagaggaggaatCAGGCTTGAGGACCTTCTCAAAAGAGAAAGTCGATGAAGAGGTTGAAAAAGGGAGAGCCGTGAAAAATCAGCTTGCCCTTTGGGACCTGATGCTTGAAAGGCGGATCAAAATGCAGAAAGCTCTTGTGACAGCCAATCAACTTCCACAACCACAAACATTCTCAGAGTTCAAGAGCAGGGGAGGGGCTGAATATGCTGATGCTTTGAAAAATAGTCATAAAGCTCTCAAGGCTCTACAAAGGTCTCTGCTGGAACTTCAAGATCTGCTGCTCCACCAAAACAAGGAAACAAGAGCCATCTCTCAGGGCAAAACCTGGGGGGATGGCAGCAGTGctaaagatgatgatgaagagatTAATAGTGAAGATGATATGGATGAAAATGAAGGTGATGACCAAGAGGTAGAACAGAAAGCAGCTCGAAACGGACCTCCCAAACGAAAACTGGAAATGGCAGATTATCCCAACTTTATGGCCAAACGCTTTGCTGCATTTCAACCGTATCGTGATACTACTCTCCAGAAATGGTATGACAAGACACGGCTAACAACGGGGAAGAACAATAAGGGTTTTGGAGCATTTGACAGGAACATCCTGACGCAGGTGGAACAGGTTTTAATGGACAAAGAGAGGCTGGTGAGGCGTACACAGACGCGCAGGTCTGAATACAGAGTCCTGGGGAAACCAGAGCCAGTTACTCCTGAAATAGACAACACCATCTCAGAGGGAGAGGTGGCTGAACTGGCAGTAAAAGCCAACATGCACCTCAAAGATCTGGATGAGAAcatttttgatgatgatgatttttatcATCAGCTTCTCCGAGAGCTTATTGAGCGCAAAACAAGTGCAACAGACCCCAATGATCAAGTGGCCATGGgaaaGCAATGGCTTGCTATCCAGAAACTGCGTAGTAAAATCAAGAAGAAGGTGGACACCAAAGCCAGCAAAGGCAGAAAAATCAGGTTTCACGTTCACAGTAAGCTGATGAATTTTATGGCTCCTATGGACAACAGCAGCATGAGCGATGATGCACGGTCTGAGCTGTTTCGTTCCTTGTTTGCAAATGGTCCAGTGACAACACAATGACTGAAACATCTGTCCCAACATGCTTATACTCCGGGTGTGTGTGTACTACAGATGTCCACACACGCGCCCATACTTATCTACTGCTCTTGCTGGTGAAATCCCTCAGGAACCCCAAACATATTTCCTTCTTTAAGTGACTTGCtgtaaatgaaactaaagagtTATTGTGATTTGTGAGCTGACACATTTTAGTGCCtctttatattaaaaacattgtcaacacacaca
>TCONS_00059555
TAAGTTGCAGCGTGGGACAGACATGGCAGCTTCCATATCACAGCAGCTCGAGGATTTGTTAAATCCTTTACCACACTTCGTGGACCCCGAGGACGACCAAGATGAAGACACCAAAGCGAAAGTCATAGAGAAGTTTGATGAAGGAGGTGATGAGAACGATGAAGAGCTTTTACCTGGTCATCTGCGGAAACGCTCTGGGGCCATTCTGGCTGATGGTGACCAACGATATCGTGGAAAGGCAACATCCAGAAAAGACCTACAGAAAGATTTGGATGGATCAGatgatgatgataatgatgatggtgttgatgatgaagatgaaagtgGAATGCTGGAAAAGTACATGGAATGcatggatgatgatgatgataatgatgatgatgatgatgatgatgatgatgatgatgatgatgatgttgagcATCAAAATGATGATGACGAGGATCTCGTTGGAGATGATGGTTCACAGATGTCCAGCTTGGTCTCCAAAATGAAGGGCACAGATTTTATGAAACTCACAGAGGGATTGGATGACCTGGGAGACAGTGACGAAGATGAGGAAACTGCTGACAGTGAAGAAGAGGAAGGAGAGAGTGATGAAGGCTCCGAGGAGGAgatggaagaagaggaggaatCAGGCTTGAGGACCTTCTC
>TCONS_00059556
GGAAACCAGAGCCAGTTACTCCTGAAATAGACAACACCATCTCAGAGGGAGAGGTGGCTGAACTGGCAGTAAAAGCCAACATGCACCTCAAAGATCTGGATGAGAAcatttttgatgatgatgatttttatcATCAGCTTCTCCGAGAGCTTATTGAGCGCAAAACAAGTGCAACAGACCCCAATGATCAAGTGGCCATGGgaaaGCAATGGCTTGCTATCCAGAAACTGCGTAGTAAAATCAAGAAGAAGGTGGACACCAAAGCCAGCAAAGGCAGAAAAATCAGGTTTCACGTTCACAGTAAGCTGATGAATTTTATGGCTCCTATGGACAACAGCAGCATGAGCGATGATGCACGTGACAACACAATGACTGAAACATCTGTCCCAACATGCTTATACTCCGGGTGTGTGTGTACTACAGATGTCCACACACGCGCCCATACTTATCTACTGCTCTTGCTGGTGAAATCCCTCAGGAACCCCAAACATATTTCCTTCTTTAAGTGACTTGCtgtaaatgaaactaaagagtTATTGTGATTTGTGAGCTGACACATTTTAGTGCCtctttatattaaaaacattgtcaacacacacacacacacagagtgtttTCATTGATGTCCTAATTGTACTGTTAGCACATGATTAAATCTAGTGAAAGCGATATCTACCTCTAAATGAA

Function

symbol description
aatf Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in nucleolus. Orthologous to human AATF (apoptosis antagonizing transcription factor).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005730 nucleolus cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-030131-9654 Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in membrane and nucleus. Predicted to be integral component of membrane. Predicted to be active in nucleolus. Orthologous to human AATF (apoptosis antagonizing transcription factor).

Ensembl:

ensembl_id ENSDARG00000025467

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059553 False 2327 mRNA 0.44 12 56277866 56306081
TCONS_00059554 False 1969 mRNA 0.45 12 56277870 56305724
TCONS_00059555 False 654 mRNA 0.45 3 56277879 56280674
TCONS_00059556 True 687 processed_transcript 0.42 6 56290135 56305811

Neighbor

gene id symbol gene type direction distance location
XLOC_030491 lhx1b coding upstream 3692 56268436 ~ 56274174 (+)
XLOC_030490 BX255908.1 coding upstream 18036 56258431 ~ 56259830 (+)
XLOC_030489 CR753837.1 coding upstream 19700 56256188 ~ 56258166 (+)
XLOC_030488 CR753837.2 coding upstream 29131 56246736 ~ 56248735 (+)
XLOC_030487 NA coding upstream 91922 56184865 ~ 56185944 (+)
XLOC_030493 NA coding downstream 127571 56433652 ~ 56438669 (+)
XLOC_030494 NA coding downstream 168529 56474610 ~ 56525693 (+)
XLOC_030495 tmem232 coding downstream 659096 56965177 ~ 56997795 (+)
XLOC_030496 NA coding downstream 715507 57021588 ~ 57025500 (+)
XLOC_030497 pja2 coding downstream 904156 57210237 ~ 57234118 (+)
XLOC_030485 NA non-coding upstream 183670 56093930 ~ 56094196 (+)
XLOC_030498 NA non-coding downstream 932637 57238718 ~ 57241553 (+)
XLOC_030502 NA non-coding downstream 1173933 57480014 ~ 57485614 (+)

Expression


Co-expression Network