XLOC_030485


Basic Information

Item Value
gene id XLOC_030485
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 56093930 ~ 56094196 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061471
AGTCTTCTCAGCCAAACCAATGCTCTTGGAGTAATAGGGGCTAGTGGTGGTATGTGTGAAACCCCATGTCTTTGCAAAGTCTTCGAACTCCTTGCCTCGATATTGTGGACCATTGTCGGAGACAAATTTCTGTGCCATACCATGTCTCGCAAAAATCACTTACAGTTTGCTGATTACAGTGGCGGCCTTTGTGTTGGTGAGTTTGTCGACTTCAAAGAACCGGCTATAGTAGTCTCCTGTAATCATGTATTCTTCATGATTCCAGGT

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0009799 specification of symmetry biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0001708 cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0048468 cell development biological_process
GO:0035239 tube morphogenesis biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0007517 muscle organ development biological_process
GO:0034470 ncRNA processing biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006364 rRNA processing biological_process
GO:0030154 cell differentiation biological_process
GO:0009855 determination of bilateral symmetry biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0043049 otic placode formation biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0030490 maturation of SSU-rRNA biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:1901861 regulation of muscle tissue development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0016202 regulation of striated muscle tissue development biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0048863 stem cell differentiation biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0048880 sensory system development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0000469 cleavage involved in rRNA processing biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0048634 regulation of muscle organ development biological_process
GO:0071696 ectodermal placode development biological_process
GO:0071697 ectodermal placode morphogenesis biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007389 pattern specification process biological_process
GO:0061053 somite development biological_process
GO:0060788 ectodermal placode formation biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0007423 sensory organ development biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0030684 preribosome cellular_component
GO:0030686 90S preribosome cellular_component
GO:0030687 preribosome, large subunit precursor cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061471 True 267 lncRNA 0.45 1 56093930 56094196

Neighbor

gene id symbol gene type direction distance location
XLOC_030484 fzd9a coding upstream 66154 56023186 ~ 56027776 (+)
XLOC_030483 fkbp6 coding upstream 104157 55984270 ~ 55989773 (+)
XLOC_030482 tmem150ab coding upstream 141802 55934129 ~ 55952128 (+)
XLOC_030481 NA coding upstream 187217 55905133 ~ 55906713 (+)
XLOC_030480 NA coding upstream 374792 55717725 ~ 55719138 (+)
XLOC_030486 mrm1 coding downstream 25779 56119975 ~ 56125769 (+)
XLOC_030487 NA coding downstream 90669 56184865 ~ 56185944 (+)
XLOC_030488 CR753837.2 coding downstream 152540 56246736 ~ 56248735 (+)
XLOC_030489 CR753837.1 coding downstream 161992 56256188 ~ 56258166 (+)
XLOC_030490 BX255908.1 coding downstream 164235 56258431 ~ 56259830 (+)
XLOC_030479 BX323563.1 non-coding upstream 422348 55671466 ~ 55671582 (+)
XLOC_030475 NA non-coding upstream 939681 55146633 ~ 55154249 (+)
XLOC_030474 NA non-coding upstream 953793 55134605 ~ 55140137 (+)
XLOC_030493 NA non-coding downstream 339456 56433652 ~ 56438669 (+)

Expression


Co-expression Network