XLOC_030475


Basic Information

Item Value
gene id XLOC_030475
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 55146633 ~ 55154249 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061466
AAGTGTGAGAGAATGTGGCTGTATCAGGAGATATAGTTTTCTAGCTGCATAGATTGAAAGAGTTAAATATGTATTGACTACATGCTTCCTTCCAGCAGAGTTCACAGCTTTGAATGGCATTATAGCTGCGATCCTTGTGGGAATAATAATTCTTCTAATAGCAGTTCATGTCAGCTGTCGGATTTTGCACCGGTATGGACATGCATTCAACCTTTTCAAATTATACAACAATATCAATCACTTCAGCAGAAGTTattattaatgtgatttttttttacagagccaAGAAACTGCTCTGGCCTAGTATACCAGATCCAGAGAAGAGCAATGCTGTTCAAAAAATTGTAATCACCTATGAACTGaGTCTCCTGGAGCCACTGACCAGACAAAAGTTAGAGGAAAGTGAGGGTTGTGATTCCAGTACAGTGTGCTTCATTGAGAACAAGAGTTATGCATTTTCATTCAGCAGTCCTTCCCCTTCTCAAGCCGGTGTGAAGCTTCATCTCAGTGAAGATGAGGACAGCCTTTCCAGTATGAGTGAGATCAACCCCCCAGATACCCCAACACAAGTCCCCACCAGAGAATCTGTTTCTACAGAGACCTTCCCGCTGGACTTCAGAAAAACAGACTGCACTTTCAGCAATTCTGTTAATAATGAAGTCATGAGTTTAGAAAGCAAAGACTCTGGAGAGACTATTACAGGTTCAGTCTTCACTCCAGCAACTTCCAAAACGCCTGCTGTGGTTTTCATGAGCGATTACACCACCATGGAGATCTTCAAGCAGGTCACCATGAATGGAATTCAGAGTCCATCTATTCAAACAGTAAAACCAAGTTTTGTTGCTGGACATCCGGGACAGGATTACATTCGACAGTCTGTATTGCAATAAGTAAACAGTCTAGTAAACATGATTGATGTAACAGAACTAAAGTTTTAATACAGCTTCAGCCACAGTGATTATTTGACAATCCCTCTGGGGTCATTTATAAGCATTCATTTTCCTGTTACAACTGAACTTTAGTGACTACTCAACATCTCCCACAATGGATATATTAAATGTTCTCATTTGTTCACAAGTGTTAGTACtgacttctgttttttttttttttttttttttttgtgattgaaatgttttgaaacatgtcattattcaacttaaagttcattttaaatactAAAGTAGGTTAACTAGTTAAGTTAGGTTAAGGCAATTTATTGAACGacagtagtttcttctgtagAAAATCAGGGGCAAAATGTTCAGGGGCCTAATAATATAAGGCTTAAAttgtaatacattattaaatctgtttttattttaaccaaaCTAAAAGGAGGTAAAATGTGtctggcacaagcttctccacagcaacagagaaggctcggctgagcgaaaaaaatacttctctgcatcactatttttgttaaacagatttttgtaccttaattgggttccagatgcagtttataaacttgtggCGTAGTtaaagcggagtttgatcgggatattccattacgctgcattttttacgtctgcaatcgggtgctctctgtttacgcaacgttagctctgttaactcggtaatttagacaatagactgttgacagagtaacgttaacgttcgtttataaaggttaaaacgatgcttttgcagttgtgtcgaatagtatgcacttatgagagttatatggtacgtctaaattactgtcttttgcagacagcaagatatatgctataggctagttaaccgtAGCATAGCTTCccatcactttttattaacttgaaactcctcaaatacatttgggcacccagaaaaagagtgaaaaagagtgagactgctgctgagccatttcttggtcctccaccaaaaaaaaaaaaaaaaaaaaatcttcaggtTCTGtctggaagcattttacagtcagtggtgctgcagataaaacaaagtgatactgtatgtaatgtgtgcaaaagtgaaatcagcagagagagatattaaacatctgtcaacatcttctgtgcataatcattcatttcttttcggcttagtccctttatcaatctggggttgccacagtggaatgaaccaccaatttatccagcatatgttttacgcagtggctgcccttccagttGCTAtctagcactgggaaacatccatacactctctttcacacacatacaatagggactatttagcttacccagttcacctgtattgcatgtgtttggactgtgggggaaaccggagcacccggaggaaacccacgccaacatggggagaacccagtcgaggctcgaaccagcaaccttcttgctgtgaggcgacagtgctactcactgtgccactgcgcaaccttctat
>TCONS_00061465
AAGTGTGAGAGAATGTGGCTGTATCAGGAGATATAGTTTTCTAGCTGCATAGATTGAAAGAGTTAAATATGTATTGACTACATGCTTCCTTCCAGCAGAGTTCACAGCTTTGAATGGCATTATAGCTGCGATCCTTGTGGGAATAATAATTCTTCTAATAGCAGTTCATGTCAGCTGTCGGATTTTGCACCGagccaAGAAACTGCTCTGGCCTAGTATACCAGATCCAGAGAAGAGCAATGCTGTTCAAAAAATTGTAATCACCTATGAACTGaGTCTCCTGGAGCCACTGACCAGACAAAAGTTAGAGGAAAGTGAGGGTTGTGATTCCAGTACAGTGTGCTTCATTGAGAACAAGAGTTATGCATTTTCATTCAGCAGTCCTTCCCCTTCTCAAGCCGGTGTGAAGCTTCATCTCAGTGAAGATGAGGACAGCCTTTCCAGTATGAGTGAGATCAACCCCCCAGATACCCCAACACAAGTCCCCACCAGAGAATCTGTTTCTACAGAGACCTTCCCGCTGGACTTCAGAAAAACAGACTGCACTTTCAGCAATTCTGTTAATAATGAAGTCATGAGTTTAGAAAGCAAAGACTCTGGAGAGACTATTACAGGTTCAGTCTTCACTCCAGCAACTTCCAAAACGCCTGCTGTGGTTTTCATGAGCGATTACACCACCATGGAGATCTTCAAGCAGGTCACCATGAATGGAATTCAGAGTCCATCTATTCAAACAGTAAAACCAAGTTTTGTTGCTGGACATCCGGGACAGGATTACATTCGACAGTCTGTATTGCAATAAGTAAACAGTCTAGTAAACATGATTGATGTAACAGAACTAAAGTTTTAATACAGCTTCAGCCACAGTGATTATTTGACAATCCCTCTGGGGTCATTTATAAGCATTCATTTTCCTGTTACAACTGAACTTTAGTGACTACTCAACATCTCCCACAATGGATATATTAAATGTTCTCATTTGTTCACAAGTGTTAGTACtgacttctgttttttttttttttttttttttttgtgattgaaatgttttgaaacatgtcattattcaacttaaagttcattttaaatactAAAGTAGGTTAACTAGTTAAGTTAGGTTAAGGCAATTTATTGAACGacagtagtttcttctgtagAAAATCAGGGGCAAAATGTTCAGGGGCCTAATAATATAAGGCTTAAAttgtaatacattattaaatctgtttttattttaaccaaaCTAAAAGGAGGTAAAATGTGtctggcacaagcttctccacagcaacagagaaggctcggctgagcgaaaaaaatacttctctgcatcactatttttgttaaacagatttttgtaccttaattgggttccagatgcagtttataaacttgtggCGTAGTtaaagcggagtttgatcgggatattccattacgctgcattttttacgtctgcaatcgggtgctctctgtttacgcaacgttagctctgttaactcggtaatttagacaatagactgttgacagagtaacgttaacgttcgtttataaaggttaaaacgatgcttttgcagttgtgtcgaatagtatgcacttatgagagttatatggtacgtctaaattactgtcttttgcagacagcaagatatatgctataggctagttaaccgtAGCATAGCTTCccatcactttttattaacttgaaactcctcaaatacatttgggcacccagaaaaagagtgaaaaagagtgagactgctgctgagccatttcttggtcctccaccaaaaaaaaaaaaaaaaaaaaatcttcaggtTCTGtctggaagcattttacagtcagtggtgctgcagataaaacaaagtgatactgtatgtaatgtgtgcaaaagtgaaatcagcagagagagatattaaacatctgtcaacatcttctgtgcataatcattcatttcttttcggcttagtccctttatcaatctggggttgccacagtggaatgaaccaccaatttatccagcatatgttttacgcagtggctgcccttccagttGCTAtctagcactgggaaacatccatacactctctttcacacacatacaatagggactatttagcttacccagttcacctgtattgcatgtgtttggactgtgggggaaaccggagcacccggaggaaacccacgccaacatggggagaacccagtcgaggctcgaaccagcaaccttcttgctgtgaggcgacagtgctactcactgtgccactgcgcaaccttctat

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0008017 microtubule binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061466 False 2363 lncRNA 0.39 2 55146633 55154249
TCONS_00061465 True 2275 lncRNA 0.40 3 55146633 55154249

Neighbor

gene id symbol gene type direction distance location
XLOC_030474 NA coding upstream 6496 55134605 ~ 55140137 (+)
XLOC_030473 CU207241.1 coding upstream 23413 55119510 ~ 55123220 (+)
XLOC_030472 NA coding upstream 72433 55065782 ~ 55074200 (+)
XLOC_030471 cd180 coding upstream 205629 54938634 ~ 54941004 (+)
XLOC_030470 NA coding upstream 434978 54711023 ~ 54711655 (+)
XLOC_030476 tmc2a coding downstream 67344 55221593 ~ 55251994 (+)
XLOC_030477 pcsk5a coding downstream 111025 55265274 ~ 55349429 (+)
XLOC_030478 ntrk2b coding downstream 472444 55626693 ~ 55689656 (+)
XLOC_030479 BX323563.1 coding downstream 517217 55671466 ~ 55671582 (+)
XLOC_030480 NA coding downstream 563476 55717725 ~ 55719138 (+)
XLOC_030464 NA non-coding upstream 663766 54481759 ~ 54482867 (+)
XLOC_030481 NA non-coding downstream 750884 55905133 ~ 55906713 (+)
XLOC_030485 NA non-coding downstream 939681 56093930 ~ 56094196 (+)
XLOC_030487 NA non-coding downstream 1030616 56184865 ~ 56185944 (+)

Expression


Co-expression Network