XLOC_030481


Basic Information

Item Value
gene id XLOC_030481
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 55905133 ~ 55906713 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061467
accgcaaacaagcgccatcaccacagacaacgcctgcgtcgtctcttcacccaacggattcatcctcgtacaagactgaagtaaaggtaAAATGACAaaagttaaggtgtacctggtaatagctgaagtgtgagccacagccattgatgttgaaacactgatgctaccaatcaaccctcgcttgattattaaagtcttattctTTGGACTCGGAGGGTCGAGTGGTCctgggacctcacctggatttcacaactgactttgagtctggtctgaaactgaagtatgctgaagatgccttttgcactctggaatttaagggccgtgttgcagacacaatttgtttgtctgtgctggagaccagaggggaagctgtctttaaaaggatggggctcttataccatatgtgaagttacctattcag
>TCONS_00061468
gacaacgcctgcgtcgtctcttcacccaacggattcatcctcggtaagttacaagactgaagtaaaggtaAAATGACAaaagttaaggtgtacctggtaatagctgaagtgtgagccacagccattgatgttgaaacactgatgctaccaatcaaccctcgcttgattattaaaggtaatgttgatgccttcctcatttttattagatttttaaatgtcaggtttttcacagatttgttgtgagcagtttcttgtacaaactctttttcttcttccagaagttccaccagtacctccagtagtagtaaatattagacaaagatttttttaaactatagtttttatttttattagcaattttactgggcatgtgtgtttgtttgcttggtttttaataggcagagcatggaatgtcaactttgtttctacaaaaaaattaaattattcacaaacacctctaatttagtccttctttcccccttttagtcttattctTTGGACTCGGAGGGTCGAGTGGTCctgggacctcacctggatttcacaactgactttgagtctggtctgaaactgaagtatgctgaagatgccttttgcactctggaatttaagggccgtgttgcagacacaatttgtttgtctgtgctggagaccagaggggaagctgtctttaaaaggatggggctcttataccatatgtgaagttacctattcag
>TCONS_00061469
cggattcatcctcgtacaagactgaagtaaaggtaAAATGACAaaagttaaggtgtacctggtaatagctgaagtgtgagccacagccattgatgttgaaacactgatgctaccaatcaaccctcgcttgattattaaaggtaatgttgatgccttcctcatttttattagatttttaaatgtcaggtttttcacagatttgttgtgagcagtttcttgtacaaactctttttcttcttccagaagttccaccagtacctccagtagtagtaaatattagacaaagatttttttaaactatagtttttatttttattagcaattttactgggcatgtgtgtttgtttgcttggtttttaataggcagagcatggaatgtcaactttgtttctacaaaaaaattaaattattcacaaacacctctaatttagtccttctttcccccttttagtcttattctTTGGACTCGGAGGGTCGAGTGGTCctgggacctcacctggatttcacaactgactttgagtctggtctgaaactgaagtatgctgaagatgccttttgcactctggaatttaagggccgtgttgcagacacaatttgtttgtctgtgctggagaccagaggggaagctgtctttaaaaggatggggctcttataccatatgtgaagttacctattcaggtg
>TCONS_00061470
tttgttcactgtaacgttaagttagttaaataaactaaactcattatgaaagaagtcttaattgttttattaaatgaggcttataatacaattcagttgtattcttttaaactaacactaacacagtacatattgtatatttctcactggtgttaatgcagtgataacatttactaatgagaactaattgtatattgccactaactgtagattttattttttggtgttcaggtgtacctggtaatagctgaagtgtgagccacagccattgatgttgaaacactgatgctaccaatcaaccctcgcttgattattaaaggtaatgttgatgccttcctcatttttattagatttttaaatgtcaggtttttcacagatttgttgtgagcagtttcttgtacaaactctttttcttcttccagaagttccaccagtacctccagtagtagtaaatattagacaaagatttttttaaactatagtttttatttttattagcaattttactgggcatgtgtgtttgtttgcttggtttttaataggcagagcatggaatgtcaactttgtttctacaaaaaaattaaattattcacaaacacctctaatttagtccttctttcccccttttagtcttattctTTGGACTCGGAGGGTCGAGTGGTCctgggacctcacctggatttcacaactgactttgagtctggtctgaaactgaagtatgctgaagatgccttttgcactctg

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0043248 proteasome assembly biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0022624 proteasome accessory complex cellular_component
GO:0005838 proteasome regulatory particle cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0008541 proteasome regulatory particle, lid subcomplex cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061467 False 421 lncRNA 0.46 6 55905133 55906710
TCONS_00061468 False 713 lncRNA 0.39 5 55905158 55906710
TCONS_00061469 False 681 lncRNA 0.38 5 55905187 55906713
TCONS_00061470 True 744 lncRNA 0.34 2 55905575 55906491

Neighbor

gene id symbol gene type direction distance location
XLOC_030480 NA coding upstream 185995 55717725 ~ 55719138 (+)
XLOC_030478 ntrk2b coding upstream 215477 55626693 ~ 55689656 (+)
XLOC_030479 BX323563.1 coding upstream 233551 55671466 ~ 55671582 (+)
XLOC_030477 pcsk5a coding upstream 555704 55265274 ~ 55349429 (+)
XLOC_030476 tmc2a coding upstream 653139 55221593 ~ 55251994 (+)
XLOC_030482 tmem150ab coding downstream 27416 55934129 ~ 55952128 (+)
XLOC_030483 fkbp6 coding downstream 77557 55984270 ~ 55989773 (+)
XLOC_030484 fzd9a coding downstream 116473 56023186 ~ 56027776 (+)
XLOC_030485 NA coding downstream 187217 56093930 ~ 56094196 (+)
XLOC_030486 mrm1 coding downstream 213262 56119975 ~ 56125769 (+)
XLOC_030475 NA non-coding upstream 750884 55146633 ~ 55154249 (+)
XLOC_030474 NA non-coding upstream 764996 55134605 ~ 55140137 (+)
XLOC_030473 CU207241.1 non-coding upstream 781913 55119510 ~ 55123220 (+)
XLOC_030487 NA non-coding downstream 278152 56184865 ~ 56185944 (+)
XLOC_030488 CR753837.2 non-coding downstream 340023 56246736 ~ 56248735 (+)
XLOC_030489 CR753837.1 non-coding downstream 349475 56256188 ~ 56258166 (+)
XLOC_030490 BX255908.1 non-coding downstream 351718 56258431 ~ 56259830 (+)

Expression


Co-expression Network