RNA id: TCONS_00061470


Basic Information

Item Value
RNA id TCONS_00061470
length 744
lncRNA type intronic
GC content 0.34
exon number 2
gene id XLOC_030481
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 55905133 ~ 55906713 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttgttcactgtaacgttaagttagttaaataaactaaactcattatgaaagaagtcttaattgttttattaaatgaggcttataatacaattcagttgtattcttttaaactaacactaacacagtacatattgtatatttctcactggtgttaatgcagtgataacatttactaatgagaactaattgtatattgccactaactgtagattttattttttggtgttcaggtgtacctggtaatagctgaagtgtgagccacagccattgatgttgaaacactgatgctaccaatcaaccctcgcttgattattaaaggtaatgttgatgccttcctcatttttattagatttttaaatgtcaggtttttcacagatttgttgtgagcagtttcttgtacaaactctttttcttcttccagaagttccaccagtacctccagtagtagtaaatattagacaaagatttttttaaactatagtttttatttttattagcaattttactgggcatgtgtgtttgtttgcttggtttttaataggcagagcatggaatgtcaactttgtttctacaaaaaaattaaattattcacaaacacctctaatttagtccttctttcccccttttagtcttattctTTGGACTCGGAGGGTCGAGTGGTCctgggacctcacctggatttcacaactgactttgagtctggtctgaaactgaagtatgctgaagatgccttttgcactctg

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0043632 modification-dependent macromolecule catabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0010498 proteasomal protein catabolic process biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0019941 modification-dependent protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0043248 proteasome assembly biological_process
GO:0019773 proteasome core complex, alpha-subunit complex cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0022624 proteasome accessory complex cellular_component
GO:0005838 proteasome regulatory particle cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0008541 proteasome regulatory particle, lid subcomplex cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:1905368 peptidase complex cellular_component
GO:1905369 endopeptidase complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0000502 proteasome complex cellular_component
GO:1902494 catalytic complex cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0004175 endopeptidase activity molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061794 lncRNA upstream 186437 55717725 ~ 55719138 (+) True XLOC_030480
TCONS_00061466 lncRNA upstream 751326 55146633 ~ 55154249 (+) False XLOC_030475
TCONS_00061465 lncRNA upstream 751326 55146633 ~ 55154249 (+) True XLOC_030475
TCONS_00061464 lncRNA upstream 765438 55134605 ~ 55140137 (+) True XLOC_030474
TCONS_00059534 lncRNA upstream 782355 55119510 ~ 55123220 (+) True XLOC_030473
TCONS_00059543 lncRNA downstream 39307 55945798 ~ 55946681 (+) True XLOC_030482
TCONS_00061471 lncRNA downstream 187439 56093930 ~ 56094196 (+) True XLOC_030485
TCONS_00061795 lncRNA downstream 278374 56184865 ~ 56185944 (+) True XLOC_030487
TCONS_00059551 lncRNA downstream 351940 56258431 ~ 56259830 (+) True XLOC_030490
TCONS_00061796 lncRNA downstream 527161 56433652 ~ 56438669 (+) True XLOC_030493
TCONS_00059540 mRNA upstream 215919 55626693 ~ 55689656 (+) True XLOC_030478
TCONS_00059539 mRNA upstream 215966 55626693 ~ 55689609 (+) False XLOC_030478
TCONS_00059538 mRNA upstream 556146 55265550 ~ 55349429 (+) True XLOC_030477
TCONS_00059537 mRNA upstream 588624 55265274 ~ 55316951 (+) False XLOC_030477
TCONS_00059536 mRNA upstream 654145 55225497 ~ 55251430 (+) True XLOC_030476
TCONS_00059542 mRNA downstream 27638 55934129 ~ 55952128 (+) False XLOC_030482
TCONS_00059544 mRNA downstream 77779 55984270 ~ 55989773 (+) False XLOC_030483
TCONS_00059545 mRNA downstream 77872 55984363 ~ 55987938 (+) True XLOC_030483
TCONS_00059546 mRNA downstream 116695 56023186 ~ 56027776 (+) False XLOC_030484
TCONS_00059547 mRNA downstream 119540 56026031 ~ 56027776 (+) True XLOC_030484
TCONS_00059541 other upstream 233993 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059516 other upstream 1797061 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059514 other upstream 2042341 53824969 ~ 53863234 (+) True XLOC_030458
TCONS_00059512 other upstream 2148070 53700294 ~ 53757505 (+) True XLOC_030457
TCONS_00059510 other upstream 2297872 53581489 ~ 53607703 (+) False XLOC_030457
TCONS_00059549 other downstream 340245 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059550 other downstream 349697 56256188 ~ 56258166 (+) True XLOC_030489
TCONS_00059556 other downstream 383644 56290135 ~ 56305811 (+) True XLOC_030492
TCONS_00059578 other downstream 2131281 58037772 ~ 58037886 (+) True XLOC_030510
TCONS_00059579 other downstream 2305670 58212161 ~ 58212284 (+) True XLOC_030511

Expression Profile

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