XLOC_030458 (sat2b)


Basic Information

Item Value
gene id XLOC_030458
gene name sat2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 53824959 ~ 53865456 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059513
TCTTTGCGCCGACTGACGTTGTGCGCGTGCACGAGATCGAGTGCTTTAGTTAAGTAGACTGACGTTAgttataataattcattaatcaGGCAGTTTAGAAAGTCGCACTTTACCACTCCAACATGAGATTCACTATTAGCGCAGCTAAACCTGAGGACTGCAAAGATATAGAACGTATGATTATGgaattggctgtttatgaaaatatgcCCGACCAAGTAAAGATATCTCATAAAGAGTTGGAGAGAGATGGATTTGGACCAAATCCTTTTTACCATTGTCTTGTAGCTGAGGTACCTGAGGAGCACAAGTCTAAAGATGGAAACACCACGGTTGGCTATGTTATCTTTTTCTATACGTATAGCACCTGGAAAGGCAGGACTGTCTATATGGAAGATCTGTATGTGATGCCTGAGTTTAGAGGTAATGGGATTGGAAAGGCTTTACTAGGAGCTGTTGCTAAAGAGGCCAAAGACCAGCTCTGTTCACGTTTGCAGTTCTCTGTTCTTGACTGGAACAAGCCTTCTCTTTACTTTTATATGGCTAAAGGTGCAGAGGACCTCACTGCTAAGGAAGGATGGCATTTTCTACGCTTTCATGGAATGGCTCTTGACAATCTAGCACAGGAGGCACCTTAAAGTGTTAGACATCTGGCAAATTTAGACGAAGTCAGTATAGGAATAATTAAAGGgccaggggcgcccccaaggggtggccaggggtggccacggccacccctcggtaaactctggccacccctgtggccaccccaatttAATTTTGCTgtagacattattgatttaaatgtacttataaattccctatatttaaataaataaaatgcagccactaaattattgttggtgttattgACGTAGTTGATTCATTGTCTCTCCCCCTTAGTGCTGTTTCAGTGGTGAATGCTGGTAAAAGCAAAATGACGCATGcacgcagaaaaccattcccgcgcgcctcacgcactcccgtgtgaatcccggttggttgtttgcatacACGCAAACaaaataggcaccgctcatgcgccgtgaaacggagtaacagccttttgtgcagaggtgtcggcacgcagcgagttttgaaagtcgactaaagtttatataatatgatgatgacgatgatgttactttcactaagcatggctttaaagcagaaaggagggataatgagtcagggaggtaagacttcataacatgatttcttagccatgatctggtctaagaccacagataattctataatacattttttgtattctttagaattgtcataattatttTCCTGCAAAAGGTTActtaagtgatcttggcatatcacttcagttgttgttttccagtaatatttaggaacgatttctgttatttatttaaaataataattgtataataatactaatattaattgtattttaatacaattctgtgagttaccaaacaaatttcgttgtataactacaatgacaataaaggtACTTTACTTAAtactaattgtatttatttagaataaatataaataaattgttatatttattgaataacaaatctaacaattcaaagGAGGTGGGGTGtttagggtggttcgcccagggtgtcatttaaacttgAACCGCCACTGCCCTCTcgatcgtcgttgacagcacgcacacaccttcaatagacagcaatgggaatttaatatttaccttaaggtacagtttattaatagaagaagctgcataataaaatggctcaaaaagcaatatggataaattatattattaggtaAAGTGAGTGagtatatagtaatgcctttcattcaggcaacttatctagcacatttttacacagtggatgcccttccagctgcaacccatctctgggaataataaactcattaatcttcattaattttagacatggcatatactgtatgatgtaaaataaaagcgcgtaaaaaaagttatttatacaatataaatatatatatatataaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataaaagtgtttttaaactaaacatagatttttatttggtttgcacatgtacttcctgaattatttcaaggaataagttgcaatatttcaagaaaaattaattaaatgaataaaaactacattatttcatttaccagaaacaaaaatataacattacacttaattcattatttttttgtgtgccaccccaagatttggtgctgcctcttctggccacccctaagaaaattttctgggggcgccactgtaaagggcacctataataaaaatattcttttgtAAGCTGGACAGAACtgtggacagaactgtgtgcaggtatagtgtccacagtcatattaagGGTGATAtaaaaaataggatccaaatccctcccattttgaggccgacctTAACTTGATGTAGAAACGAGGTTTCCCTGCCCACTGAATTGAGTGACAGTCATATATTAACTTGTCTCTGTAGTAACGAGTATAATCttgtcaacaagacaggacgtgtgcaaagcaactgggattaaaagatttgTTGAGCTCACTGTTTTCATCAATTATCAAATTTGAAtgaagaatgagttttacaagtttaaaagcttttttaaacagtgaatgtttgtaatgaattacagcgatttacttcagcatTACTTTATTACCAAAGCCGTGTGTCAGTAaatttataaaagaagatgctttaatCCCAGATTGTGgaggttaaatcaggtttattttgtacattaacataacggatatccatacagcagtggatgttaatgtgtatcctgtcacattcaCCATGCAAAAAcgtaataaaaaaagttaaacttg
>TCONS_00059514
GACTGACGTTGTGCGCGTGCACGAGATCGAGTGCTTTAGTTAAGTAGACTGACGTTAgttataataattcattaatcaGGCAGTTTAGAAAGTCGCACTTTACCACTCCAACATGAGATTCACTATTAGCGCAGCTAAACCTGAGGACTGCAAAGATATAGAACGTATGATTATGAGTTGGAGAGAGATGGATTTGGACCAAATCCTTTTTACCATTGTCTTGTAGCTGAGGTACCTGAGGAGCACAAGTCTAAAGATGGAAACACCACGGTTGGCTATGTTATCTTTTTCTATACGTATAGCACCTGGAAAGGCAGGACTGTCTATATGGAAGATCTGTATGTGATGCCTGAGTTTAGAGGTAATGGGATTGGAAAGGCTTTACTAGGAGCTGTTGCTAAAGAGGCCAAAGACCAGCTCTGTTCACGTTTGCAGTTCTCTGTTCTTGACTGGAACAAGCCTTCTCTTTACTTTTATATGGCTAAAGGTGCAGAGGACCTCACTGCTAAGGAAGGATGGCATTTTCTACGCTTTCATGGAATGGCTCTTGACAATCTAGCACAGGAGGCACCTTAAAGTGTTAGACATCTGGCAAATTTAGACGAAGTCAGTATAGGAATAATTAAAGGgc

Function

symbol description
sat2b Predicted to enable diamine N-acetyltransferase activity and spermidine binding activity. Predicted to be involved in spermidine acetylation. Orthologous to human SAT2 (spermidine/spermine N1-acetyltransferase family member 2).

GO:

id name namespace
GO:0032918 spermidine acetylation biological_process
GO:0005575 cellular_component cellular_component
GO:0019809 spermidine binding molecular_function
GO:0016740 transferase activity molecular_function
GO:0008080 N-acetyltransferase activity molecular_function
GO:0004145 diamine N-acetyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-292 Predicted to enable diamine N-acetyltransferase activity and spermidine binding activity. Predicted to be involved in spermidine acetylation. Orthologous to human SAT2 (spermidine/spermine N1-acetyltransferase family member 2).

Ensembl:

ensembl_id ENSDARG00000104221

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059513 False 2915 mRNA 0.35 6 53824959 53865456
TCONS_00059514 True 631 processed_transcript 0.42 5 53824969 53863234

Neighbor

gene id symbol gene type direction distance location
XLOC_030457 taf6 coding upstream 59481 53580846 ~ 53765478 (+)
XLOC_030456 BX323994.1 coding upstream 340170 53479576 ~ 53484789 (+)
XLOC_030455 NA coding upstream 632154 53191662 ~ 53192805 (+)
XLOC_030454 NA coding upstream 633892 53188004 ~ 53191067 (+)
XLOC_030453 hint2 coding upstream 757025 53009083 ~ 53067934 (+)
XLOC_030459 naa38 coding downstream 10713 53876169 ~ 53908674 (+)
XLOC_030460 CR450749.2 coding downstream 240554 54106010 ~ 54108514 (+)
XLOC_030461 rangrf coding downstream 414679 54280135 ~ 54294086 (+)
XLOC_030462 bspry coding downstream 535515 54400971 ~ 54415064 (+)
XLOC_030463 traf2b coding downstream 557485 54422941 ~ 54453848 (+)
XLOC_030449 BX957336.2 non-coding upstream 1382467 52438392 ~ 52442492 (+)
XLOC_030448 FP016029.1 non-coding upstream 1599154 52225684 ~ 52225805 (+)
XLOC_030446 AL935198.1 non-coding upstream 1767405 52055227 ~ 52057554 (+)
XLOC_030464 NA non-coding downstream 616303 54481759 ~ 54482867 (+)
XLOC_030470 NA non-coding downstream 845567 54711023 ~ 54711655 (+)
XLOC_030472 NA non-coding downstream 1200326 55065782 ~ 55074200 (+)
XLOC_030473 CU207241.1 non-coding downstream 1254054 55119510 ~ 55123220 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_00067936_00068888 NA coding CI01000059 null 67936 ~ 69097 (+)