XLOC_030461 (rangrf)


Basic Information

Item Value
gene id XLOC_030461
gene name rangrf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 54280135 ~ 54294086 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00059517
AAAACTTGAAGAAGAAATTGGAGACAAGTCACGTGGTGAATTAATCTAAGTGAAATGTTTTATACGAACTAATTTTATTGTTAGTTTACGtcatatgattattttttatttgtgatagAATTACGATGTGATGGCCACTTAATACTAAAATCGGGTGCGTTCCAAATCGCTAAATTATGCACCATTGTACGCCGTTTTGTATTAGTGCGTTCACACCGTAAATTCTAGCCTGGTTGTCAATGCAGTTGTACTCGTGACAGGCACTAACGTTATATGATAATCTGGTGATTTGTTTCAATTTATTACTTATCATTCTTTTGTTACTTCATTTTGGAAACTATTTGAGTTTCCGGTAAGTTTTTTTAATTGAGACGACGCTAAACATACACTACACGGTTGAGAGTGTAAGTTAAAGTGCGTAGTGCATACCATTGTGTCATTTGTGTCCCAACTTTTGTGTTATAAAAAATTGTTCCAGTCGCAGCATAGATATGTCACGGCCTCTGTTTGGCGGTGCGTTATCAGCCGTTTTCCCTTCCAGTGTTATGGATATCAGTGAACTGAGACAGATCCCTGATAACCAAGAAGTGTTCGCTCACTCTCAAACAGACCAGAGTATTATCATTGAACTGCTGGAGTATCAAAGCCAAGTGCAGGATGCTGACGCAGCCAGGTATCACTTTGAAGACGTGGCTGGCAGTAACAAGGCGATAGAGAATGGCACATGGGAGGTCAGAGTGGTGGAACAGGTTCCCCAGTCAGAGATCTCTATGCAGGAATGCAGCTCTGCATGGCTGCTTTCTGGAGCTCAGCTTGTTTCTAAATTCAATGAGGAGgCAAAGAACACTGTGAATGTCCATCAGTGCTTGTTTCGCCTACCGCAGTTCACCACTGACATCTTAATGACGTTCAACGATCCTGTTTTTATCAATCCCCTCAGCAGCAGTGCCGCTGGTAATATGGAAGCTATACCATGGACACTACAAGACTTCCAGGGTGTTCTGCAGTCCTTGCGTCTACTCGACTCTGGAGTGTTCGGGTAGTTGCTTAATGGggtctaaattaaaaaaaaaactaaaaaaaaaaaaaaaaaccttttacattaatgtattttaaaagctaGACTCTCTgagatttttgtttcttttctttgcaTTTGTTTGATTCATAGATTTGTTATGTAAATAGAGAATCTTGAAATGTAAAAGAGAAATAAAAgatacttattttttaataagaaagaA
>TCONS_00059518
AAATGTTTTATACGAACTAATTTTATTGTTAGTTTACGtcatatgattattttttatttgtgatagAATTACGATGTGATGGCCACTTAATACTAAAATCGGGTGCGTTCCAAATCGCTAAATTATGCACCATTGTACGCCGTTTTGTATTAGTGCGTTCACACCGTAAATTCTAGCCTGGTTGTCAATGCAGTTGTACTCGTGACAGGCACTAACGTTATATGATAATCTGGTGATTTGTTTCAATTTATTACTTATCATTCTTTTGTTACTTCATTTTGGAAACTATTTGAGTTTCCGTCGCAGCATAGATATGTCACGGCCTCTGTTTGGCGGTGCGTTATCAGCCGTTTTCCCTTCCAGTGTTATGGATATCAGTGAACTGAGACAGATCCCTGATAACCAAGAAGTGTTCGCTCACTCTCAAACAGACCAGAGTATTATCATTGAACTGCTGGAGTATCAAAGCCAAGTGCAGGATGCTGACGCAGCCAGGTATCACTTTGAAGACGTGGCTGGCAGTAACAAGGCGATAGAGAATGGCACATGGGAGGTCAGAGTGGTGGAACAGGTTCCCCAGTCAGAGATCTCTATGCAGGAATGCAGCTCTGCATGGCTGCTTTCTGGAGCTCAGCTTGTTTCTAAATTCAATGAGGAGgCAAAGAACACTGTGAATGTCCATCAGTGCTTGTTTCGCCTACCGCAGTTCACCACTGACATCTTAATGACGTTCAACGATCCTGTTTTTATCAATCCCCTCAGCAGCAGTGCCGCTGGTAATATGGAAGCTATACCATGGACACTACAAGACTTCCAGGGTGTTCTGCAGTCCTTGCGTCTACTCGACTCTGGAGTGTTCGGGTAGTTGCTTAATGGggtctaaattaaaaaaaaaactaaaaaaaaaaaaaaaaaccttttacattaatgtattttaaaagctaGACTCTCTgagatttttgtttcttttctttgcaTTTGTTTGATTCATAGATTTGTTATGTAAATAGAGAATCTTGAAATGTAAAAGAGAAATAAAAgatacttattttttaataagaaagaA

Function

symbol description
rangrf Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within heart contraction and heart looping. Predicted to be located in nucleus; perinuclear region of cytoplasm; and plasma membrane. Is expressed in blastomere; brain; eye; fin; and heart. Orthologous to human RANGRF (RAN guanine nucleotide release factor).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0001947 heart looping biological_process
GO:0060047 heart contraction biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-143 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within heart contraction and heart looping. Predicted to be located in nucleus; perinuclear region of cytoplasm; and plasma membrane. Is expressed in blastomere; brain; eye; fin; and heart. Orthologous to human RANGRF (RAN guanine nucleotide release factor).

Ensembl:

ensembl_id ENSDARG00000098786

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00059517 False 1244 mRNA 0.39 5 54280135 54294086
TCONS_00059518 True 1066 mRNA 0.39 6 54280187 54294086

Neighbor

gene id symbol gene type direction distance location
XLOC_030460 CR450749.2 coding upstream 171621 54106010 ~ 54108514 (+)
XLOC_030459 naa38 coding upstream 371461 53876169 ~ 53908674 (+)
XLOC_030458 sat2b coding upstream 414679 53824959 ~ 53865456 (+)
XLOC_030457 taf6 coding upstream 514657 53580846 ~ 53765478 (+)
XLOC_030456 BX323994.1 coding upstream 795346 53479576 ~ 53484789 (+)
XLOC_030462 bspry coding downstream 106885 54400971 ~ 54415064 (+)
XLOC_030463 traf2b coding downstream 128855 54422941 ~ 54453848 (+)
XLOC_030464 NA coding downstream 187673 54481759 ~ 54482867 (+)
XLOC_030465 tmem203 coding downstream 203389 54497475 ~ 54499117 (+)
XLOC_030466 tprn coding downstream 207019 54501105 ~ 54542062 (+)
XLOC_030455 NA non-coding upstream 1087330 53191662 ~ 53192805 (+)
XLOC_030454 NA non-coding upstream 1089068 53188004 ~ 53191067 (+)
XLOC_030449 BX957336.2 non-coding upstream 1837643 52438392 ~ 52442492 (+)
XLOC_030448 FP016029.1 non-coding upstream 2054330 52225684 ~ 52225805 (+)
XLOC_030470 NA non-coding downstream 416937 54711023 ~ 54711655 (+)
XLOC_030472 NA non-coding downstream 771696 55065782 ~ 55074200 (+)
XLOC_030473 CU207241.1 non-coding downstream 825424 55119510 ~ 55123220 (+)
XLOC_030474 NA non-coding downstream 840519 55134605 ~ 55140137 (+)

Expression


Co-expression Network