RNA id: TCONS_00059517


Basic Information

Item Value
RNA id TCONS_00059517
length 1244
RNA type mRNA
GC content 0.39
exon number 5
gene id XLOC_030461
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 54280135 ~ 54294086 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAACTTGAAGAAGAAATTGGAGACAAGTCACGTGGTGAATTAATCTAAGTGAAATGTTTTATACGAACTAATTTTATTGTTAGTTTACGtcatatgattattttttatttgtgatagAATTACGATGTGATGGCCACTTAATACTAAAATCGGGTGCGTTCCAAATCGCTAAATTATGCACCATTGTACGCCGTTTTGTATTAGTGCGTTCACACCGTAAATTCTAGCCTGGTTGTCAATGCAGTTGTACTCGTGACAGGCACTAACGTTATATGATAATCTGGTGATTTGTTTCAATTTATTACTTATCATTCTTTTGTTACTTCATTTTGGAAACTATTTGAGTTTCCGGTAAGTTTTTTTAATTGAGACGACGCTAAACATACACTACACGGTTGAGAGTGTAAGTTAAAGTGCGTAGTGCATACCATTGTGTCATTTGTGTCCCAACTTTTGTGTTATAAAAAATTGTTCCAGTCGCAGCATAGATATGTCACGGCCTCTGTTTGGCGGTGCGTTATCAGCCGTTTTCCCTTCCAGTGTTATGGATATCAGTGAACTGAGACAGATCCCTGATAACCAAGAAGTGTTCGCTCACTCTCAAACAGACCAGAGTATTATCATTGAACTGCTGGAGTATCAAAGCCAAGTGCAGGATGCTGACGCAGCCAGGTATCACTTTGAAGACGTGGCTGGCAGTAACAAGGCGATAGAGAATGGCACATGGGAGGTCAGAGTGGTGGAACAGGTTCCCCAGTCAGAGATCTCTATGCAGGAATGCAGCTCTGCATGGCTGCTTTCTGGAGCTCAGCTTGTTTCTAAATTCAATGAGGAGgCAAAGAACACTGTGAATGTCCATCAGTGCTTGTTTCGCCTACCGCAGTTCACCACTGACATCTTAATGACGTTCAACGATCCTGTTTTTATCAATCCCCTCAGCAGCAGTGCCGCTGGTAATATGGAAGCTATACCATGGACACTACAAGACTTCCAGGGTGTTCTGCAGTCCTTGCGTCTACTCGACTCTGGAGTGTTCGGGTAGTTGCTTAATGGggtctaaattaaaaaaaaaactaaaaaaaaaaaaaaaaaccttttacattaatgtattttaaaagctaGACTCTCTgagatttttgtttcttttctttgcaTTTGTTTGATTCATAGATTTGTTATGTAAATAGAGAATCTTGAAATGTAAAAGAGAAATAAAAgatacttattttttaataagaaagaA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0001947 heart looping biological_process
GO:0060047 heart contraction biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-143 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within heart contraction and heart looping. Predicted to be located in nucleus; perinuclear region of cytoplasm; and plasma membrane. Is expressed in blastomere; brain; eye; fin; and heart. Orthologous to human RANGRF (RAN guanine nucleotide release factor).

Ensembl:

ensembl_id ENSDART00000170218

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061788 lncRNA upstream 1087330 53191662 ~ 53192805 (+) True XLOC_030455
TCONS_00061462 lncRNA upstream 1089068 53188004 ~ 53191067 (+) True XLOC_030454
TCONS_00059496 lncRNA upstream 1837643 52438392 ~ 52442492 (+) True XLOC_030449
TCONS_00061787 lncRNA upstream 2252404 52015419 ~ 52027731 (+) True XLOC_030444
TCONS_00059487 lncRNA upstream 2264244 52014665 ~ 52015891 (+) False XLOC_030444
TCONS_00061789 lncRNA downstream 187673 54481759 ~ 54482750 (+) False XLOC_030464
TCONS_00061463 lncRNA downstream 187695 54481781 ~ 54482867 (+) True XLOC_030464
TCONS_00061790 lncRNA downstream 416937 54711023 ~ 54711655 (+) True XLOC_030470
TCONS_00061791 lncRNA downstream 771696 55065782 ~ 55074200 (+) False XLOC_030472
TCONS_00061792 lncRNA downstream 771702 55065788 ~ 55074200 (+) False XLOC_030472
TCONS_00059515 mRNA upstream 371461 53876169 ~ 53908674 (+) True XLOC_030459
TCONS_00059513 mRNA upstream 414679 53824959 ~ 53865456 (+) False XLOC_030458
TCONS_00059509 mRNA upstream 514657 53580846 ~ 53765478 (+) False XLOC_030457
TCONS_00059508 mRNA upstream 514657 53580846 ~ 53765478 (+) False XLOC_030457
TCONS_00059511 mRNA upstream 518189 53691803 ~ 53761946 (+) False XLOC_030457
TCONS_00059519 mRNA downstream 106885 54400971 ~ 54415064 (+) True XLOC_030462
TCONS_00059520 mRNA downstream 128855 54422941 ~ 54453346 (+) False XLOC_030463
TCONS_00059521 mRNA downstream 130506 54424592 ~ 54453346 (+) False XLOC_030463
TCONS_00059522 mRNA downstream 130527 54424613 ~ 54453848 (+) True XLOC_030463
TCONS_00059523 mRNA downstream 203389 54497475 ~ 54499044 (+) False XLOC_030465
TCONS_00059516 other upstream 171621 54106010 ~ 54108514 (+) True XLOC_030460
TCONS_00059514 other upstream 416901 53824969 ~ 53863234 (+) True XLOC_030458
TCONS_00059512 other upstream 522630 53700294 ~ 53757505 (+) True XLOC_030457
TCONS_00059510 other upstream 672432 53581489 ~ 53607703 (+) False XLOC_030457
TCONS_00059495 other upstream 2054330 52225684 ~ 52225805 (+) True XLOC_030448
TCONS_00059541 other downstream 1377380 55671466 ~ 55671582 (+) True XLOC_030479
TCONS_00059549 other downstream 1952650 56246736 ~ 56248735 (+) True XLOC_030488
TCONS_00059550 other downstream 1962102 56256188 ~ 56258166 (+) True XLOC_030489
TCONS_00059556 other downstream 1996049 56290135 ~ 56305811 (+) True XLOC_030492
TCONS_00059578 other downstream 3743686 58037772 ~ 58037886 (+) True XLOC_030510

Expression Profile

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